input_wf_bacterial_kmer.yaml

Extract_Kmers_From_Input___entry:
  class: File
  location: sequences.asn
gencoll_asn:
  class: File
  location: gencoll.asn

asn_cache:
  class: Directory
  location: sequence_cache

gc_seq_cache:
  class: Directory
  location: /panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/ThirdParty/ExternalData/Pathogen/kmer-cache-minhash/18.sqlite/production/assemblies.cache 

gc_cache:
  class: File
  location: /panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/ThirdParty/ExternalData/Pathogen/kmer-cache-minhash/18.sqlite/production/gencoll.sqlite

kmer_cache_sqlite:
  class: File
  location: /panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/ThirdParty/ExternalData/Pathogen/kmer-cache-minhash/18.sqlite/production/kmer.sqlite
ref_assembly_taxid: 2097
ref_assembly_id: 28128 
ANI_cutoff: 
  class: File
  location: /panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/dev/automated_builds/installations/regr_bct/current/third-party/data/BacterialPipeline/ANI_cutoff/ANI_cutoff.xml
kmer_reference_assemblies:
  class: File
  location: kmer_uri_list
gcextract2_sqlite:
  class: File
  location: /panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/home/badrazat/jira/PGAPX-584-ani_top_identification-needs-to-/GCExtract2.sqlite
taxon_db:
  class: File
  location: /panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/ThirdParty/ExternalData/BacterialPipeline/uniColl/production/current/taxonomy.sqlite3
tax_synon:
  class: File
  location: /panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/home/badrazat/jira/PGAPX-585-save-ProkRefseqTracking-TaxSynon/TaxSynon.tsv