From fcf262684ce835a201b0bc94c9a68e4057ef4737 Mon Sep 17 00:00:00 2001 From: Vyacheslav Brover Date: Thu, 6 Feb 2025 11:34:53 -0500 Subject: [PATCH] PD-5238 use 'stxtyper --threads' --- amrfinder.cpp | 3 ++- stx | 2 +- version.txt | 2 +- 3 files changed, 4 insertions(+), 3 deletions(-) diff --git a/amrfinder.cpp b/amrfinder.cpp index f5cc24b..dbadc4c 100644 --- a/amrfinder.cpp +++ b/amrfinder.cpp @@ -33,6 +33,7 @@ * Dependencies: NCBI BLAST, HMMer, libcurl, gunzip (optional) * * Release changes: +* 4.0.19 02/06/2025 PD-5238 "stxtyper --threads" is re-enabled * 4.0.18 02/04/2025 PD-5231 StxTyper ver. 1.0.40 of branch "dev" * 4.0.17 01/31/2025 PD-5231 StxTyper ver. 1.0.39 of branch "dev" * 4.0.16 01/30/2025 PD-5231 StxTyper ver. 1.0.38 of branch "dev" @@ -1205,7 +1206,7 @@ struct ThisApplication final : ShellApplication + ifS (print_node, " --print_node") + " -q " // ifS (getVerbosity () == -1, " -q") + ifS (qc_on, " --debug") - //+ " --threads " + to_string (threads_max ) ?? + + " --threads " + to_string (threads_max ) + " > " + logFName , logFName ); diff --git a/stx b/stx index 47d3a08..679eeb1 160000 --- a/stx +++ b/stx @@ -1 +1 @@ -Subproject commit 47d3a08afd08824c082b4ed1a49f3d3741adb515 +Subproject commit 679eeb192084509481e845e8f0c86591b2cb2cb9 diff --git a/version.txt b/version.txt index 029696b..805226c 100644 --- a/version.txt +++ b/version.txt @@ -1 +1 @@ -4.0.18 +4.0.19