From ec17536159e31eec8e962d7042b405e1385db72b Mon Sep 17 00:00:00 2001 From: Jeffrey Bloom Date: Wed, 7 Aug 2024 16:46:47 -0400 Subject: [PATCH] add precommit and run on all files FHIR-2450 --- .idea/aws.xml | 4 +- .idea/codeStyles/Project.xml | 2 +- .idea/codeStyles/codeStyleConfig.xml | 2 +- .idea/inspectionProfiles/Project_Default.xml | 302 +++++++++++++++--- .idea/misc.xml | 12 +- .idea/modules.xml | 19 +- .idea/vcs.xml | 12 +- .pre-commit-config.yaml | 15 + README.md | 19 +- jupyter/Notebook01_intro.ipynb | 19 +- jupyter/Notebook02_studies.ipynb | 101 +++--- jupyter/Notebook03_test_study.ipynb | 95 +++--- jupyter/Notebook04_controlled_COPDGene.ipynb | 173 +++++----- jupyter/dbgap_fhir.py | 150 +++++---- ...01_phs002921_URECA_subject_phenotype.ipynb | 91 ++++-- jupyter/pilot/README.md | 3 +- jupyter/pilot/fhir_fetcher.py | 21 +- .../dbGaP_FHIR_API.postman_collection.json.md | 51 +-- pre-commit-3.6.0.pyz | Bin 0 -> 5581044 bytes 19 files changed, 712 insertions(+), 379 deletions(-) create mode 100644 .pre-commit-config.yaml create mode 100755 pre-commit-3.6.0.pyz diff --git a/.idea/aws.xml b/.idea/aws.xml index b63b642..fce7d91 100644 --- a/.idea/aws.xml +++ b/.idea/aws.xml @@ -1,4 +1,4 @@ - + - \ No newline at end of file + diff --git a/.idea/codeStyles/Project.xml b/.idea/codeStyles/Project.xml index 5fc93d9..99a48c8 100644 --- a/.idea/codeStyles/Project.xml +++ b/.idea/codeStyles/Project.xml @@ -13,4 +13,4 @@