fixed dupmakser bed script for double tabs?

mrvollger · mrvollger · commit 6d5bf04e1f6f · 2022-01-14T07:41:23.000-08:00
diff --git a/workflow/scripts/DupMasker_bed9.py b/workflow/scripts/DupMasker_bed9.py
@@ -31,7 +31,7 @@ def hex_to_rgb(h):
     color = pd.read_csv(args.infile, sep="\t", dtype=d_types)
     # these rows are no good, they come from contigs that have messed up results. fix TODO
     bad = ((color["chr"] == "0") & (color["chrEnd"] == "#BEBEBE")) | (
-        color["chrStart"] == 0 & color["chrEnd"] == 0
+        (color["chrStart"] == 0) & (color["chrEnd"] == 0)
     )
     color.drop(color[bad].index, inplace=True)
 

Original file line number	Diff line number	Diff line change
`@@ -31,7 +31,7 @@ def hex_to_rgb(h):`
`31`	`31`	`color = pd.read_csv(args.infile, sep="\t", dtype=d_types)`
`32`	`32`	`# these rows are no good, they come from contigs that have messed up results. fix TODO`
`33`	`33`	`bad = ((color["chr"] == "0") & (color["chrEnd"] == "#BEBEBE")) \| (`
`34`		`- color["chrStart"] == 0 & color["chrEnd"] == 0`
	`34`	`+ (color["chrStart"] == 0) & (color["chrEnd"] == 0)`
`35`	`35`	`)`
`36`	`36`	`color.drop(color[bad].index, inplace=True)`
`37`	`37`