CMakeLists.txt

# This is the root ITK CMakeLists file.
cmake_minimum_required(VERSION 2.8.9)
if(COMMAND CMAKE_POLICY)
  cmake_policy(SET CMP0003 NEW)
endif()

#set(ITK_DIR /Users/hauke/src/itk/InsightToolkit-4.8.1/bin)
#set(ITK_DIR /Users/hauke/src/itk/InsightToolkit-5.0.0/bin)
if (EXISTS "/Users/hauke/src/itk/InsightToolkit-5.0.0/bin")
  set(ITK_DIR /Users/hauke/src/itk/InsightToolkit-5.0.0/bin)
else()
  set(ITK_DIR /opt/InsightToolkit-5.0.1/bin)
endif()

IF(UNIX AND NOT APPLE)
  set(LINUX TRUE)
  message(STATUS ">>> Linux")
ELSE()
  message(STATUS ">>> MacOS")
ENDIF()


#SET(CMAKE_CXX_FLAGS "-std=c++0x")
IF(LINUX)
   SET(CMAKE_CXX_FLAGS "-std=c++11")
ELSE()
   # find the correct path for isysroot with `xcrun --show-sdk-path`
   SET(CMAKE_CXX_FLAGS "-std=c++11 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk -I/usr/local/include")
ENDIF()

project(LungSegmentation)

  FIND_PACKAGE(ITK)
    IF(ITK_FOUND)
        INCLUDE(${ITK_USE_FILE})
    ELSE(ITK_FOUND)
         MESSAGE(FATAL_ERROR "Cannot build ITKApps without ITK.  Please set ITK_DIR.")
    ENDIF(ITK_FOUND)


# Boost
set(boost_min_ver 1.50.0)
set(boost_libs system filesystem timer date_time)
find_package(Boost ${boost_min_ver})

if(Boost_FOUND)
    find_package(Boost ${boost_min_ver} COMPONENTS ${boost_libs})
endif()

#target_link_libraries(your_target ${Boost_LIBRARIES})

add_executable(LungSegmentation LungSegmentation.cxx )
target_link_libraries(LungSegmentation  ${ITK_LIBRARIES} ${Boost_LIBRARIES})

add_executable(MaskRegistration MaskRegistration.cxx )
target_link_libraries(MaskRegistration  ${ITK_LIBRARIES} ${Boost_LIBRARIES})

add_executable(FakeLungVolumes FakeLungVolumes.cxx )
target_link_libraries(FakeLungVolumes  ${ITK_LIBRARIES} ${Boost_LIBRARIES})