Changelog

All notable changes to this project will be documented in this file.

The format is based on Keep a Changelog and this project adheres to Semantic Versioning.

[Unreleased]

Fixed

Added a failsafe mechanism to deal with misaligned taxonomy (TaxID not found in nodes.dmp).
Taxonomy nodes and names files are downloaded together with the rest of the database #36.
tidytable works with relative path #30.
covplot has been slightly slightly changed to fix #33 and #28. It's also faster.

Changed

covplot reports more information on sequence length and covered bases, and features the Economist theme.
update now performs some tests on the integrity of viral_database.fasta.
orgs_list now includes species name and coverage information #32.
The viral database now includes all reference viral genomes #34.
VirMet now saves its version and the information on the viral database into the output directory #26.
virmet update now has some output even when no new sequences are added #19.

[1.1.1] - 2017-05-22

Fixed

Failure to create output directory when wolfpack was run on a single file with slashes in the path.
A bug in tidytable prevented to run if the directory was given with a trailing slash.
order (a method deprecated in pandas) replaced with sort_values.

[1.1] - 2017-04-26

Added

Subcommand tidytable creates two tables with summary information for samples/runs.