From 2923786f1f8abc06736ab6205607b262a4f13990 Mon Sep 17 00:00:00 2001 From: Matthias Griebel Date: Wed, 12 Jun 2024 15:14:27 +0200 Subject: [PATCH] Fix dependency versions (#58) Closes #56 #57 --- deepflash2/gt.py | 4 ++-- settings.ini | 4 ++-- 2 files changed, 4 insertions(+), 4 deletions(-) diff --git a/deepflash2/gt.py b/deepflash2/gt.py index f14b76f..255c50b 100644 --- a/deepflash2/gt.py +++ b/deepflash2/gt.py @@ -22,7 +22,7 @@ def import_sitk(): assert SimpleITK.Version_MajorVersion()==2 except: print('Installing SimpleITK. Please wait.') - install_package("SimpleITK==2.0.2") + install_package("SimpleITK==2.1.1.1") import SimpleITK return SimpleITK @@ -162,4 +162,4 @@ def show_gt(self, method='STAPLE', max_n=6, files=None, figsize=(15,7), **kwargs plt.tight_layout() plt.show() display(plt_df) - display(Markdown('---')) \ No newline at end of file + display(Markdown('---')) diff --git a/settings.ini b/settings.ini index 4d1f313..e0eb298 100644 --- a/settings.ini +++ b/settings.ini @@ -5,7 +5,7 @@ user = matjesg description = A Deep learning pipeline for segmentation of fluorescent labels in microscopy images keywords = unet, deep learning, semantic segmentation, microscopy, fluorescent labels author = Matthias Griebel -author_email = matthias.griebel@uni-wuerzburg.com +author_email = griebelmatthias@gmail.com copyright = Würzburg University branch = master version = 0.2.3 @@ -15,7 +15,7 @@ language = English custom_sidebar = True license = apache2 status = 2 -requirements = fastai>=2.1.7 zarr>=2.0 tifffile==2022.4.8 scikit-image imageio ipywidgets openpyxl imagecodecs albumentations>=1.0.0 natsort>=7.1.1 numba>=0.52.0 opencv-python-headless>=4.1.1,<4.5.5 timm==0.6.7 +requirements = fastai>=2.1.7 zarr>=2.0 tifffile==2022.4.8 scikit-image imageio ipywidgets openpyxl imagecodecs pandas==1.4.0 fastcore==1.5.27 albumentations>=1.0.0 natsort>=7.1.1 numba>=0.52.0 opencv-python-headless>=4.1.1,<4.5.5 timm==0.6.7 pip_requirements = segmentation-models-pytorch-deepflash2 conda_requirements = segmentation_models_pytorch>=0.3.0 nbs_path = nbs