Large error at segdup at end of GSATII in chr14_PATERNAL:18,347,448-18,348,454

[jzook]

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Issue location in assembly (use format chromosome:start-end, e.g., chr13_MATERNAL:3740148-9625296)

chr14_PATERNAL:18347448-18348454

Description of the issue

Long reads all indicate there is an issue with the assembly here, though unclear what the exact problem is. Not sure how we hadn't caught this yet, but maybe because the sequence is very wrong and it's at the edge of GSATII and a segdup