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Collapsed ~2kb repeat around chr13_MATERNAL:958,545-985,179 #673

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nhansen opened this issue Mar 4, 2024 · 0 comments
Closed
1 task done

Collapsed ~2kb repeat around chr13_MATERNAL:958,545-985,179 #673

nhansen opened this issue Mar 4, 2024 · 0 comments
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large_error This issue describes a poor quality or misassembled region in the assembly v1.0 This is an issue/error in the hg002v1.0 assembly

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nhansen commented Mar 4, 2024

Have you confirmed that this issue hasn't already been reported?

  • I have confirmed in the UCSC browser hub that this is a new issue (required)

Issue location in assembly (use format chromosome:start-end, e.g., chr13_MATERNAL:3740148-9625296)

chr13_MATERNAL:958545-985179

Description of the issue

A collapsed repeat of roughly 2000 bp needs patching here:
image
@nhansen nhansen added v1.0 This is an issue/error in the hg002v1.0 assembly large_error This issue describes a poor quality or misassembled region in the assembly labels Mar 4, 2024
@nhansen nhansen closed this as completed Feb 21, 2025
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large_error This issue describes a poor quality or misassembled region in the assembly v1.0 This is an issue/error in the hg002v1.0 assembly
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