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Larger localized issue in the hg002v1.0 assembly AT-microsatellite chr10_MATERNAL:110,134,550-110,136,922 #672

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jzook opened this issue Feb 23, 2024 · 0 comments
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Larger localized issue in the hg002v1.0 assembly AT-microsatellite chr10_MATERNAL:110,134,550-110,136,922 #672

jzook opened this issue Feb 23, 2024 · 0 comments
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large_error This issue describes a poor quality or misassembled region in the assembly v1.0 This is an issue/error in the hg002v1.0 assembly

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jzook commented Feb 23, 2024

Have you confirmed that this issue hasn't already been reported?

  • I have confirmed in the UCSC browser hub that this is a new issue (required)

Issue location in assembly (use format chromosome:start-end, e.g., chr13_MATERNAL:3740148-9625296)

chr10_MATERNAL:110,134,550-110,136,922

Description of the issue

Looks like maternal haplotype is missing ~60bp, and paternal haplotype may have ~30 extra bp in AT microsatellite regions of ~2kb
Screenshot 2024-02-23 at 5 08 53 PM
@jzook jzook added v1.0 This is an issue/error in the hg002v1.0 assembly large_error This issue describes a poor quality or misassembled region in the assembly labels Feb 23, 2024
@nhansen nhansen closed this as completed Feb 21, 2025
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large_error This issue describes a poor quality or misassembled region in the assembly v1.0 This is an issue/error in the hg002v1.0 assembly
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