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fix: use tidy description
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DESCRIPTION

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Package: ggcoverage
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Type: Package
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Package: ggcoverage
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Title: Visualize Genome/Protein Coverage with Various Annotations
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Version: 1.3.0
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Authors@R: c(
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person(given = "Yabing",
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family = "Song",
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role = c("aut", "cre"),
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email = "[email protected]"),
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person(given = "Michael",
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family = "Jahn",
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email = "[email protected]",
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role = "aut",
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person("Yabing", "Song", , "[email protected]", role = c("aut", "cre", "cph")),
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person("Michael", "Jahn", , "[email protected]", role = c("aut", "cph"),
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comment = c(ORCID = "0000-0002-3913-153X"))
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)
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Maintainer: Yabing Song <[email protected]>
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Description: The goal of 'ggcoverage' is to simplify the process of visualizing genome/protein coverage. It contains functions to
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load data from BAM, BigWig, BedGraph or txt/xlsx files, create genome/protein coverage plot, add various annotations to
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the coverage plot, including base and amino acid annotation, GC annotation, gene annotation, transcript annotation, ideogram annotation,
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peak annotation, contact map annotation, link annotation and peotein feature annotation.
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Description: The goal of 'ggcoverage' is to simplify the process of
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visualizing genome/protein coverage. It contains functions to load
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data from BAM, BigWig, BedGraph or txt/xlsx files, create
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genome/protein coverage plots, add various annotations to the coverage
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plot, including base and amino acid annotation, GC annotation, gene
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annotation, transcript annotation, ideogram annotation, peak
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annotation, contact map annotation, link annotation and protein
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feature annotation.
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License: MIT + file LICENSE
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Encoding: UTF-8
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RoxygenNote: 7.3.1
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URL: https://showteeth.github.io/ggcoverage/, https://github.com/showteeth/ggcoverage
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URL: https://showteeth.github.io/ggcoverage/,
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https://github.com/showteeth/ggcoverage
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BugReports: https://github.com/showteeth/ggcoverage/issues
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biocViews:
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Imports:
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BiocParallel,
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Biostrings,
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BSgenome,
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dplyr,
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GenomeInfoDb,
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GenomicAlignments,
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GenomicRanges,
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ggbio,
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ggforce,
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ggh4x,
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ggpattern,
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ggplot2,
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ggrepel,
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grDevices,
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gridExtra,
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HiCBricks,
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IRanges,
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magrittr,
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methods,
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openxlsx,
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patchwork,
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RColorBrewer,
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reshape2,
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rlang,
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Rsamtools,
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rtracklayer,
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scales,
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stats,
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utils,
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methods,
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GenomeInfoDb,
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S4Vectors,
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Biostrings,
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BSgenome,
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GenomicAlignments,
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reshape2,
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scales,
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seqinr,
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ggforce,
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HiCBricks,
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ggpattern,
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BiocParallel,
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openxlsx,
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stats,
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stringr,
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gridExtra
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utils
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Suggests:
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rmarkdown,
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knitr,
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BiocStyle,
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htmltools,
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BSgenome.Hsapiens.UCSC.hg19,
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graphics,
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HiCDataHumanIMR90
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VignetteBuilder: knitr
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HiCDataHumanIMR90,
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htmltools,
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knitr,
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rmarkdown
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VignetteBuilder:
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knitr
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biocViews:
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Encoding: UTF-8
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RoxygenNote: 7.3.1

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