Pandas 2.0 and above breaks call to read_table()

[colinvwood]

As indicated in #17, the squeeze parameter no longer exists in pandas 2.0+, which qiime2 environments now have. Here is a link to user on the forum encountering the error.

The relevant read_table call is here.

[ARW-UBT]

While this message was a warning in previous qiime2 releases, in q2-amplicon-2024.10 it is an error. The qiime SCNIC make-modules-on-correlations command does no longer run.
Are there any plans to get this code updated for use in q2-2024.10 or later?

In q2-2024.2, the warning message was:
The squeeze argument has been deprecated and will be removed in a future version. Append .squeeze("columns") to the call to squeeze.
Any suggestions how the corresponding read_table call should look like (see previous comment)

Best regards