From a9e3ac53b044ef389e5198c93dddfcc7ab1f6e0f Mon Sep 17 00:00:00 2001
From: shafferm <michael.shaffer@ucdenver.edu>
Date: Mon, 28 Nov 2016 11:32:23 -0700
Subject: [PATCH] changed setup.py and setup.cfg in order to allow python
 setup.py test to work

---
 setup.cfg | 2 ++
 setup.py  | 4 +++-
 2 files changed, 5 insertions(+), 1 deletion(-)

diff --git a/setup.cfg b/setup.cfg
index b88034e..0115b61 100644
--- a/setup.cfg
+++ b/setup.cfg
@@ -1,2 +1,4 @@
 [metadata]
 description-file = README.md
+[aliases]
+test=pytest
\ No newline at end of file
diff --git a/setup.py b/setup.py
index 923d908..df372f8 100644
--- a/setup.py
+++ b/setup.py
@@ -5,7 +5,9 @@
 setup(
     name="SCNIC",
     version="0.2",
-    install_requires=["numpy", "scipy", "networkx", "biom-format", "pandas", "fast_sparCC", "pytest"],
+    setup_requires=['pytest-runner'],
+    test_require=['pytest'],
+    install_requires=["numpy", "scipy", "networkx", "biom-format", "pandas", "fast_sparCC"],
     scripts=["scripts/SCNIC_analysis.py"],
     packages=find_packages(),
     description="A tool for finding and summarizing modules of highly correlated observations in compositional data",