Parsing Ubiquinone or Coenzyme

[JauntyJJS]

Hi,

I am currently using rgoslin release version 1.1.2

I was trying to use it to parse a Ubiquinone, namely Coenzyme Q10.

Unfortunately, I do not know what name should I use as an input.

• CoQ 10
• Coenzyme Q10
• Ubiquinone-10

library("rgoslin")

isValidLipidName("CoQ 10")
#> Warning in rcpp_is_valid_lipid_name(lipidName): Parsing of lipid name 'CoQ 10'
#> caused an exception: Lipid not found
#> [1] FALSE
isValidLipidName("Coenzyme Q10")
#> Warning in rcpp_is_valid_lipid_name(lipidName): Parsing of lipid name 'Coenzyme
#> Q10' caused an exception: Lipid not found
#> [1] FALSE
isValidLipidName("Ubiquinone-10")
#> Warning in rcpp_is_valid_lipid_name(lipidName): Parsing of lipid name
#> 'Ubiquinone-10' caused an exception: Lipid not found
#> [1] FALSE
Created on 2021-09-02 by the reprex package (v2.0.1)

Kindly advise.

Thank you.

[nilshoffmann]

@JauntyJJS Hi, we currently do not support them in Goslin / rgoslin 1.1.2, sorry. The issue here is, that there is no agreed upon shorthand nomenclature available so far for prenol lipids (as far as I know @dominik-kopczynski ).

A full list of currently supported lipid classes is available here: https://github.com/lifs-tools/goslin/blob/master/lipid-list.csv