From c61829b20bde5d08572fbff6542d584fbd8ba154 Mon Sep 17 00:00:00 2001 From: rfiorella Date: Wed, 8 Jan 2025 20:40:33 +0000 Subject: [PATCH] =?UTF-8?q?Deploying=20to=20gh-pages=20from=20@=20lanl/NEO?= =?UTF-8?q?Niso@f6d3dcc6e1963e7cb393db8d8b37c3aa01fea371=20=F0=9F=9A=80?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit --- 404.html | 8 +- LICENSE.html | 8 +- articles/example_workflow.html | 10 +- articles/index.html | 6 +- articles/reference_corrections.html | 10 +- authors.html | 8 +- deps/data-deps.txt | 4 +- deps/font-awesome-6.5.2/css/all.css | 8028 +++++++++++++++++ deps/font-awesome-6.5.2/css/all.min.css | 9 + deps/font-awesome-6.5.2/css/v4-shims.css | 2194 +++++ deps/font-awesome-6.5.2/css/v4-shims.min.css | 6 + .../webfonts/fa-brands-400.ttf | Bin 0 -> 209128 bytes .../webfonts/fa-brands-400.woff2 | Bin 0 -> 117852 bytes .../webfonts/fa-regular-400.ttf | Bin 0 -> 67860 bytes .../webfonts/fa-regular-400.woff2 | Bin 0 -> 25392 bytes .../webfonts/fa-solid-900.ttf | Bin 0 -> 420332 bytes .../webfonts/fa-solid-900.woff2 | Bin 0 -> 156400 bytes .../webfonts/fa-v4compatibility.ttf | Bin 0 -> 10832 bytes .../webfonts/fa-v4compatibility.woff2 | Bin 0 -> 4792 bytes index.html | 12 +- news/index.html | 14 +- pkgdown.js | 8 + pkgdown.yml | 4 +- reference/NEONiso-package.html | 24 +- reference/R_to_delta.html | 15 +- reference/calculate_12CO2.html | 21 +- reference/calculate_13CO2.html | 21 +- .../calibrate_ambient_carbon_gainoffset.html | 149 + .../calibrate_ambient_carbon_linreg.html | 25 +- reference/calibrate_ambient_water_linreg.html | 35 +- reference/calibrate_carbon.html | 10 +- reference/calibrate_water.html | 10 +- reference/carbon_regression_plots.html | 15 +- .../convert_NEONhdf5_to_POSIXct_time.html | 15 +- .../convert_POSIXct_to_NEONhdf5_time.html | 18 +- reference/correct_carbon_ref_cval.html | 8 +- reference/correct_carbon_ref_output.html | 13 +- reference/delta_to_R.html | 15 +- reference/estimate_calibration_error.html | 30 +- reference/extract_carbon_cal_data.html | 18 +- reference/extract_water_calibration_data.html | 18 +- reference/filter_median_brock86.html | 15 +- reference/fit_carbon_regression.html | 31 +- reference/fit_water_regression.html | 21 +- reference/get_Rstd.html | 21 +- reference/index.html | 102 +- reference/ingest_data.html | 21 +- reference/loocv.html | 13 +- reference/manage_local_EC_archive.html | 14 +- reference/restructure_carbon_variables.html | 15 +- reference/restructure_variables.html | 17 +- reference/restructure_water_variables.html | 15 +- reference/select_daily_reference_data.html | 12 +- reference/setup_output_file.html | 18 +- reference/swap_standard_isotoperatios.html | 8 +- reference/terrestrial_core_sites.html | 15 +- reference/terrestrial_gradient_sites.html | 15 +- reference/validate_analyte.html | 15 +- reference/validate_output_file.html | 18 +- reference/water_isotope_sites.html | 15 +- reference/write_carbon_ambient_data.html | 10 +- reference/write_carbon_calibration_data.html | 18 +- reference/write_water_ambient_data.html | 10 +- reference/write_water_calibration_data.html | 15 +- search.json | 2 +- sitemap.xml | 6 +- 66 files changed, 10895 insertions(+), 356 deletions(-) create mode 100644 deps/font-awesome-6.5.2/css/all.css create mode 100644 deps/font-awesome-6.5.2/css/all.min.css create mode 100644 deps/font-awesome-6.5.2/css/v4-shims.css create mode 100644 deps/font-awesome-6.5.2/css/v4-shims.min.css create mode 100644 deps/font-awesome-6.5.2/webfonts/fa-brands-400.ttf create mode 100644 deps/font-awesome-6.5.2/webfonts/fa-brands-400.woff2 create mode 100644 deps/font-awesome-6.5.2/webfonts/fa-regular-400.ttf create mode 100644 deps/font-awesome-6.5.2/webfonts/fa-regular-400.woff2 create mode 100644 deps/font-awesome-6.5.2/webfonts/fa-solid-900.ttf create mode 100644 deps/font-awesome-6.5.2/webfonts/fa-solid-900.woff2 create mode 100644 deps/font-awesome-6.5.2/webfonts/fa-v4compatibility.ttf create mode 100644 deps/font-awesome-6.5.2/webfonts/fa-v4compatibility.woff2 create mode 100644 reference/calibrate_ambient_carbon_gainoffset.html diff --git a/404.html b/404.html index 4b7bcdf..6e43758 100644 --- a/404.html +++ b/404.html @@ -8,8 +8,8 @@ Page not found (404) • NEONiso - - + + @@ -20,7 +20,7 @@ NEONiso - 0.7.0 + 0.7.1 + + + + + +
+
+
+ +

Calibrate ambient carbon isotope data using gain-and-offset method

+ Source: R/calibrate_ambient_carbon_gainoffset.R +
calibrate_ambient_carbon_gainoffset.Rd
+
+ +
+

Function called by calibrate_carbon_bymonth() to apply +gain and offset parameters to the ambient datasets (000_0x0_09m and +000_0x0_30m). This function should generally not be used independently, +but should be used in coordination with +calibrate_carbon_bymonth().

+
+ +
+

Usage

+ 
calibrate_ambient_carbon_gainoffset(
+  amb_data_list,
+  caldf,
+  site,
+  filter_data = TRUE,
+  force_to_end = TRUE,
+  force_to_beginning = TRUE,
+  gap_fill_parameters = FALSE,
+  r2_thres = 0.9
+)
+
+ +
+

Arguments

+ + +
amb_data_list
+

List containing an ambient d13C dataset. +Will include all variables in 000_0x0_xxm. (character)

+ + +
caldf
+

Calibration data frame containing gain and offset values for +12C and 13C isotopologues.

+ + +
site
+

Four-letter NEON code corresponding to site being processed.

+ + +
filter_data
+

Apply median absolute deviation filter from Brock 86 to +remove impulse spikes?

+ + +
force_to_end
+

In given month, calibrate ambient data later than last +calibration, using the last calibration? (default true)

+ + +
force_to_beginning
+

In given month, calibrate ambient data before than +first calibration, using the firs t calibration? (default true)

+ + +
gap_fill_parameters
+

Should function attempt to 'gap-fill' across a +bad calibration by carrying the last known good calibration +forward? Implementation is fairly primitive currently, as +it only carries the last known good calibration that's +available forward rather than interpolating, etc. Default FALSE.

+ + +
r2_thres
+

Minimum r2 value for calibration to be considered "good" and +applied to ambient data.

+ +
+
+

Value

+

Depends on write_to_file argument. +If true, returns nothing to environment; +but returns calibrated ambient observations to the output file. +If false, returns modified version of amb_data_list that include +calibrated ambient data.

+
+
+

Author

+

Rich Fiorella rfiorella@lanl.gov

+
+ +
+ + +
+

Developed by Rich Fiorella.

+
+ +
+

Site built with pkgdown 2.1.1.

+
+ +
+ + + + + + + diff --git a/reference/calibrate_ambient_carbon_linreg.html b/reference/calibrate_ambient_carbon_linreg.html index 29a2699..657913c 100644 --- a/reference/calibrate_ambient_carbon_linreg.html +++ b/reference/calibrate_ambient_carbon_linreg.html @@ -1,5 +1,11 @@ -calibrate_ambient_carbon_linreg — calibrate_ambient_carbon_linreg • NEONiso +Calibrate ambient carbon isotope data using linear regression — calibrate_ambient_carbon_linreg • NEONiso Skip to contents @@ -7,7 +13,7 @@ NEONiso - 0.7.0 + 0.7.1