Skip to content

Create example workflows for (all) public available CellProfiler Pipelines #2

@dietzc

Description

@dietzc

With this integration we can process nearly any CellProfiler pipeline in KNIME.

We want to create example workflows for all of the pipelines. The pipelines, however, have to be manipulated a bit before they work inside KNIME. More specifically, "Save Images" and "Export to Spreadsheet" should be removed from the pipeline in CellProfiler and the pipeline should be exported again afterwards.

If you experience any problems, or if further modules have to be removed to get the pipeline running in KNIME, please post here!

Metadata

Metadata

Assignees

Labels

No labels
No labels

Type

No type

Projects

No projects

Milestone

No milestone

Relationships

None yet

Development

No branches or pull requests

Issue actions