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TODO
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- scheduler for gap_weight
- InterPro script to analyze model outputs
- wget -qO- https://dl.secondarymetabolites.org/mibig/mibig_json_3.1.tar.gz | tar xvz
-- I'll try to help with a link to a few papers:
-- ProteinMPNN: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9997061/
-- RoseTTAFold Diffusion: https://www.nature.com/articles/s41586-023-06415-8
-- RosettaFoldAA : chrome-extension://efaidnbmnnnibpcajpcglclefindmkaj/https://www.biorxiv.org/content/10.1101/2023.10.09.561603v1.full.pdf
-- Protein design with langauge models (ESM familiy): https://github.com/facebookresearch/esm
-- A good entry point is colabfold: https://github.com/sokrypton/ColabFold
-- And a long list here about machine learning for proteins:
-- https://github.com/yangkky/Machine-learning-for-proteins
- check these entries
Unwanted GO term found! in entry: A0A2I2FY38
['GO:0022857', 'GO:0055085']
Unwanted GO term found! in entry: A0A397FXE3
['GO:0022857', 'GO:0055085']
Unwanted GO term found! in entry: A0AA40KBW0
['GO:0022857', 'GO:0055085']
Unwanted GO term found! in entry: A0A0G4NLM8
['GO:0022857', 'GO:0055085']
Unwanted GO term found! in entry: A0A8H3ZMW3
['GO:0022857', 'GO:0055085']
Unwanted GO term found! in entry: Q2H9K3
['GO:0022857', 'GO:0055085']
Unwanted GO term found! in entry: A0A8H6QCH4
['GO:0022857', 'GO:0055085']
Unwanted GO term found! in entry: A0A8H4RMX1
['GO:0022857', 'GO:0055085']
Unwanted GO term found! in entry: A0A9P6LI09
['GO:0022857', 'GO:0055085']
Unwanted GO term found! in entry: A0A1Y2TDZ1
['GO:0022857', 'GO:0055085']
Unwanted GO term found! in entry: A0A1Y2VS14
['GO:0022857', 'GO:0055085']