-
Notifications
You must be signed in to change notification settings - Fork 43
/
Copy pathcrAssphage.bib
187 lines (173 loc) · 7.52 KB
/
crAssphage.bib
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
@article{shkoporov_crass001_2018,
title = {Φ{CrAss}001 represents the most abundant bacteriophage family in the human gut and infects Bacteroides intestinalis},
volume = {9},
issn = {2041-1723},
url = {https://doi.org/10.1038/s41467-018-07225-7},
pages = {4781},
number = {1},
journaltitle = {Nature Communications},
author = {Shkoporov, Andrey N. and Khokhlova, Ekaterina V. and Fitzgerald, C. Brian and Stockdale, Stephen R. and Draper, Lorraine A. and Ross, R. Paul and Hill, Colin},
urldate = {2018-11-20},
date = {2018-12},
langid = {english},
file = {Kokoteksti:/Users/karkman/Zotero/storage/J7MUMBLP/Shkoporov ym. - 2018 - ΦCrAss001 represents the most abundant bacteriopha.pdf:application/pdf}
}
@article{bengtsson-palme_shotgun_2014,
title = {Shotgun metagenomics reveals a wide array of antibiotic resistance genes and mobile elements in a polluted lake in India},
volume = {5},
issn = {1664-302X},
url = {https://doi.org/10.3389/fmicb.2014.00648},
pages = {648},
journaltitle = {Frontiers in Microbiology},
author = {Bengtsson-Palme, Johan and Boulund, Fredrik and Fick, Jerker and Kristiansson, Erik and Larsson, D. G. Joakim},
urldate = {2018-09-06},
date = {2014-12-02}
}
@article{stachler_correlation_2018,
title = {Correlation of {crAssphage} {qPCR} Markers with Culturable and Molecular Indicators of Human Fecal Pollution in an Impacted Urban Watershed},
volume = {52},
issn = {0013-936X, 1520-5851},
url = {https://doi.org/10.1021/acs.est.8b00638},
pages = {7505--7512},
number = {13},
journaltitle = {Environmental Science \& Technology},
author = {Stachler, Elyse and Akyon, Benay and de Carvalho, Nathalia Aquino and Ference, Christian and Bibby, Kyle},
urldate = {2018-08-27},
date = {2018-07-03},
langid = {english}
}
@article{ahmed_precipitation_2018,
title = {Precipitation influences pathogenic bacteria and antibiotic resistance gene abundance in storm drain outfalls in coastal sub-tropical waters},
volume = {116},
issn = {01604120},
url = {https://doi.org/10.1016/j.envint.2018.04.005},
pages = {308--318},
journaltitle = {Environment International},
author = {Ahmed, Warish and Zhang, Qian and Lobos, Aldo and Senkbeil, Jacob and Sadowsky, Michael J. and Harwood, Valerie J. and Saeidi, Nazanin and Marinoni, Oswald and Ishii, Satoshi},
urldate = {2018-06-01},
date = {2018-07},
langid = {english}
}
@article{stachler_metagenomic_2014,
title = {Metagenomic Evaluation of the Highly Abundant Human Gut Bacteriophage {CrAssphage} for Source Tracking of Human Fecal Pollution},
volume = {1},
issn = {2328-8930, 2328-8930},
url = {https://doi.org/10.1021/ez500266s},
pages = {405--409},
number = {10},
journaltitle = {Environmental Science \& Technology Letters},
author = {Stachler, Elyse and Bibby, Kyle},
urldate = {2018-05-16},
date = {2014-10-14},
langid = {english}
}
@article{stachler_quantitative_2017,
title = {Quantitative {CrAssphage} {PCR} Assays for Human Fecal Pollution Measurement},
volume = {51},
issn = {0013-936X, 1520-5851},
url = {https://doi.org/10.1021/acs.est.7b02703},
pages = {9146--9154},
number = {16},
journaltitle = {Environmental Science \& Technology},
author = {Stachler, Elyse and Kelty, Catherine and Sivaganesan, Mano and Li, Xiang and Bibby, Kyle and Shanks, Orin C.},
urldate = {2018-05-16},
date = {2017-08-15},
langid = {english}
}
@article{karkman_antibiotic-resistance_2018,
title = {Antibiotic-Resistance Genes in Waste Water},
volume = {26},
issn = {0966842X},
url = {https://doi.org/10.1016/j.tim.2017.09.005},
pages = {220--228},
number = {3},
journaltitle = {Trends in Microbiology},
author = {Karkman, Antti and Do, Thi Thuy and Walsh, Fiona and Virta, Marko P.J.},
urldate = {2018-05-16},
date = {2018-03},
langid = {english}
}
@article{kristiansson_pyrosequencing_2011,
title = {Pyrosequencing of Antibiotic-Contaminated River Sediments Reveals High Levels of Resistance and Gene Transfer Elements},
volume = {6},
issn = {1932-6203},
url = {https://doi.org/10.1371/journal.pone.0017038},
pages = {e17038},
number = {2},
journaltitle = {{PLoS} {ONE}},
author = {Kristiansson, Erik and Fick, Jerker and Janzon, Anders and Grabic, Roman and Rutgersson, Carolin and Weijdegård, Birgitta and Söderström, Hanna and Larsson, D. G. Joakim},
editor = {Rodriguez-Valera, Francisco},
urldate = {2018-03-15},
date = {2011-02-16},
langid = {english}
}
@article{garcia-aljaro_determination_2017,
title = {Determination of {crAssphage} in water samples and applicability for tracking human faecal pollution},
volume = {10},
issn = {17517915},
url = {https://doi.org/10.1111/1751-7915.12841},
pages = {1775--1780},
number = {6},
journaltitle = {Microbial Biotechnology},
author = {García-Aljaro, Cristina and Ballesté, Elisenda and Muniesa, Maite and Jofre, Juan},
urldate = {2018-03-15},
date = {2017-11},
langid = {english}
}
@article{ahmed_evaluation_2018,
title = {Evaluation of the novel {crAssphage} marker for sewage pollution tracking in storm drain outfalls in Tampa, Florida},
volume = {131},
issn = {00431354},
url = {https://doi.org/10.1016/j.watres.2017.12.011},
pages = {142--150},
journaltitle = {Water Research},
author = {Ahmed, Warish and Lobos, Aldo and Senkbeil, Jacob and Peraud, Jayme and Gallard, Javier and Harwood, Valerie J.},
urldate = {2018-03-15},
date = {2018-03},
langid = {english}
}
@article{guo_metagenomic_2017,
title = {Metagenomic analysis reveals wastewater treatment plants as hotspots of antibiotic resistance genes and mobile genetic elements},
volume = {123},
issn = {00431354},
url = {https://doi.org/10.1016/j.watres.2017.07.002},
pages = {468--478},
journaltitle = {Water Research},
author = {Guo, Jianhua and Li, Jie and Chen, Hui and Bond, Philip L. and Yuan, Zhiguo},
urldate = {2017-09-19},
date = {2017-10},
langid = {english}
}
@article{rizzo_urban_2013,
title = {Urban wastewater treatment plants as hotspots for antibiotic resistant bacteria and genes spread into the environment: A review},
volume = {447},
issn = {00489697},
url = {https://doi.org/10.1016/j.scitotenv.2013.01.032},
shorttitle = {Urban wastewater treatment plants as hotspots for antibiotic resistant bacteria and genes spread into the environment},
pages = {345--360},
journaltitle = {Science of The Total Environment},
author = {Rizzo, L. and Manaia, C. and Merlin, C. and Schwartz, T. and Dagot, C. and Ploy, M.C. and Michael, I. and Fatta-Kassinos, D.},
urldate = {2017-01-24},
date = {2013-03},
langid = {english}
}
@article{dutilh_highly_2014,
title = {A highly abundant bacteriophage discovered in the unknown sequences of human faecal metagenomes},
volume = {5},
url = {https://doi.org/10.1038/ncomms5498},
pages = {4498},
journaltitle = {Nature Communications},
shortjournal = {Nature Communications},
author = {Dutilh, Bas E. and Cassman, Noriko and {McNair}, Katelyn and Sanchez, Savannah E. and Silva, Genivaldo G. Z. and Boling, Lance and Barr, Jeremy J. and Speth, Daan R. and Seguritan, Victor and Aziz, Ramy K. and Felts, Ben and Dinsdale, Elizabeth A. and Mokili, John L. and Edwards, Robert A.},
date = {2014}
}
@article{ogilvie_resolution_2017,
title = {Resolution of habitat-associated ecogenomic signatures in bacteriophage genomes and application to microbial source tracking},
issn = {1751-7362, 1751-7370},
url = {https://doi.org/10.1038/s41396-017-0015-7},
journaltitle = {The {ISME} Journal},
author = {Ogilvie, Lesley A. and Nzakizwanayo, Jonathan and Guppy, Fergus M. and Dedi, Cinzia and Diston, David and Taylor, Huw and Ebdon, James and Jones, Brian V.},
urldate = {2018-05-16},
date = {2017-12-19},
langid = {english}
}