| Time | Description |
|---|---|
| 14:30-15:30 | Antti Karkman: Data download, QC (FASTQC) and trimming (CUTADAPT) |
| 15:30-17:00 | Jenni Hultman: Assembly (MEGAHIT) and installation of programs |
| Time | Description |
|---|---|
| 08:00-10:00 | Jenni Hultman: Assembly check and mapping with (BOWTIE2) |
| 10:00-12:00 | Antti Karkman: Read based analysis for 16S rRNA (Metaxa2) and ARG (ResFinder) |
| 12:00-14:00 | Working with your data and lunch |
| 14:00-17:00 | Antti Karkman and Jenni Hultman: Prepping files for Anvio |
| Time | Description |
|---|---|
| 09:00-10:00 | Tom Delmont: Introduction to Anvio NB. Room 2041 Biocenter 2 AND coffee and pulla |
| 10:30-12:00 | Tom Delmont: Metagenome visualization in Anvio (ANVIO) |
| 12:00-13:00 | Working with your data and lunch |
| 13:00-16:00 | Tom Delmont: Construction of MAGs with Anvio |
| 16:00-17:00 | Jenni Hultman: Wrapping up |