Cannot deploy app based on scipy-notebook template

[aagara]

When deploying the template, the template fails with the following error

ERROR: don't know how to run your application.
Please set either APP_MODULE, APP_FILE or APP_SCRIPT environment variables, or create a file 'app.py' to launch your application.

The environment is OpenShift 4.3

Here is what I have done.

Successfully created s2i-minimal-notebook and ran it by attaching to a persistent volume. As a next step tried building and deploying the scipy-template.

oc apply -f s2i-scipy-notebook.json

The build configuration is below

{
"kind": "List",
"apiVersion": "v1",
"items": [
{
"kind": "ImageStream",
"apiVersion": "image.openshift.io/v1",
"metadata": {
"name": "s2i-scipy-notebook",
"labels": {
"build": "s2i-scipy-notebook"
}
},
"spec": {
"lookupPolicy": {
"local": true
}
}
},
{
"kind": "BuildConfig",
"apiVersion": "build.openshift.io/v1",
"metadata": {
"name": "s2i-scipy-notebook-py36",
"labels": {
"build": "s2i-scipy-notebook"
}
},
"spec": {
"triggers": [
{
"type": "ConfigChange"
},
{
"type": "ImageChange"
}
],
"source": {
"type": "Git",
"git": {
"uri": "https://github.com/jupyter-on-openshift/jupyter-notebooks",
"ref": "2.5.1"
},
"contextDir": "scipy-notebook"
},
"strategy": {
"type": "Source",
"sourceStrategy": {
"from": {
"kind": "ImageStreamTag",
"name": "s2i-minimal-notebook:3.6"
}
}
},
"output": {
"to": {
"kind": "ImageStreamTag",
"name": "s2i-scipy-notebook:3.6"
}
},
"resources": {
"limits": {
"memory": "3Gi"
}
}
}
}
]
}

The build log is

Cloning "https://github.com/jupyter-on-openshift/jupyter-notebooks" ...
Commit: 3caf4f2 (Merge branch 'release/2.5.1')
Author: Graham Dumpleton Graham.Dumpleton@gmail.com
Date: Sat Nov 30 14:24:57 2019 +1100
Caching blobs under "/var/cache/blobs".
Getting image source signatures
Copying blob sha256:84e620d0abe585d05a7bed55144af0bc5efe083aed05eac1e88922034ddf1ed2
Copying blob sha256:bb13d92caffa705f32b8a7f9f661e07ddede310c6ccfa78fb53a49539740e29b
Copying blob sha256:c8106f599d69375cbfc2ef44b11812ddc33938ab1e94860b02c262118f837611
Copying blob sha256:d796d9c455b3bb7953bfc479ad682ad206dc1fed8dda0feff247ce5ae2b7f7ef
Copying blob sha256:455ea8ab06218495bbbcb14b750a0d644897b24f8c5dcf9e8698e27882583412
Copying blob sha256:6a4fa4bc2d06e942c0e92d69614b4ee30c2d409c95f29a3a22ece8087ce164be
Copying config sha256:fe58f0d156ce4570484e00c72fc5382064b09644f9321061c55c55c7dbd3c9e8
Writing manifest to image destination
Storing signatures
Generating dockerfile with builder image image-registry.openshift-image-registry.svc:5000/custom-namespace/s2i-minimal-notebook@sha256:cbd4e8258e4b7bb84e810129e364d1243c549a32cc52f4869edb98d15bb7e6cb
STEP 1: FROM image-registry.openshift-image-registry.svc:5000/custom-namespace/s2i-minimal-notebook@sha256:cbd4e8258e4b7bb84e810129e364d1243c549a32cc52f4869edb98d15bb7e6cb
STEP 2: LABEL "io.openshift.build.commit.author"="Graham Dumpleton Graham.Dumpleton@gmail.com" "io.openshift.build.commit.date"="Sat Nov 30 14:24:57 2019 +1100" "io.openshift.build.commit.id"="3caf4f2bff7c3ae665234f63034421965aa013aa" "io.openshift.build.commit.ref"="2.5.1" "io.openshift.build.commit.message"="Merge branch 'release/2.5.1'" "io.openshift.build.source-location"="https://github.com/jupyter-on-openshift/jupyter-notebooks" "io.openshift.build.source-context-dir"="scipy-notebook" "io.openshift.build.image"="image-registry.openshift-image-registry.svc:5000/custom-namespace/s2i-minimal-notebook@sha256:cbd4e8258e4b7bb84e810129e364d1243c549a32cc52f4869edb98d15bb7e6cb"
STEP 3: ENV XDG_CACHE_HOME="/opt/app-root/src/.cache" OPENSHIFT_BUILD_NAME="s2i-scipy-notebook-py36-1" OPENSHIFT_BUILD_NAMESPACE="custom-namespace" OPENSHIFT_BUILD_SOURCE="https://github.com/jupyter-on-openshift/jupyter-notebooks" OPENSHIFT_BUILD_REFERENCE="2.5.1" OPENSHIFT_BUILD_COMMIT="3caf4f2bff7c3ae665234f63034421965aa013aa"
STEP 4: USER root
STEP 5: COPY upload/scripts /tmp/scripts
STEP 6: COPY upload/src /tmp/src
STEP 7: RUN chown -R 1001:0 /tmp/scripts /tmp/src
STEP 8: USER 1001
STEP 9: RUN /tmp/scripts/assemble

• set -eo pipefail

• /opt/app-root/builder/assemble

• set -eo pipefail

• rm -f requirements.txt

• '[' -s /tmp/build/requirements.txt ']'

• /usr/libexec/s2i/assemble
  ---> Installing application source ...
  ---> Installing dependencies ...
  Collecting beautifulsoup4==4.8.*
  Downloading beautifulsoup4-4.8.2-py3-none-any.whl (106 kB)
  Collecting bokeh==1.3.*
  Downloading bokeh-1.3.4.tar.gz (17.8 MB)
  Collecting cloudpickle==1.2.*
  Downloading cloudpickle-1.2.2-py2.py3-none-any.whl (25 kB)
  Collecting cython==0.29.*
  Downloading Cython-0.29.21-cp36-cp36m-manylinux1_x86_64.whl (2.0 MB)
  Collecting dill==0.3.*
  Downloading dill-0.3.2.zip (177 kB)
  Collecting h5py==2.9.*
  Downloading h5py-2.9.0-cp36-cp36m-manylinux1_x86_64.whl (2.8 MB)
  Collecting ipywidgets==7.5.*
  Downloading ipywidgets-7.5.1-py2.py3-none-any.whl (121 kB)
  Collecting matplotlib==3.1.*
  Downloading matplotlib-3.1.3-cp36-cp36m-manylinux1_x86_64.whl (13.1 MB)
  Collecting numba==0.45.*
  Downloading numba-0.45.1-cp36-cp36m-manylinux1_x86_64.whl (3.5 MB)
  Collecting numexpr==2.6.*
  Downloading numexpr-2.6.9-cp36-cp36m-manylinux1_x86_64.whl (163 kB)
  Collecting pandas==0.25.*
  Downloading pandas-0.25.3-cp36-cp36m-manylinux1_x86_64.whl (10.4 MB)
  Collecting patsy==0.5.*
  Downloading patsy-0.5.1-py2.py3-none-any.whl (231 kB)
  Collecting protobuf==3.9.*
  Downloading protobuf-3.9.2-cp36-cp36m-manylinux1_x86_64.whl (1.2 MB)
  Collecting scikit-image==0.15.*
  Downloading scikit_image-0.15.0-cp36-cp36m-manylinux1_x86_64.whl (26.3 MB)
  Collecting scikit-learn==0.21.*
  Downloading scikit_learn-0.21.3-cp36-cp36m-manylinux1_x86_64.whl (6.7 MB)
  Collecting scipy==1.3.*
  Downloading scipy-1.3.3-cp36-cp36m-manylinux1_x86_64.whl (25.2 MB)
  Collecting seaborn==0.9.*
  Downloading seaborn-0.9.1-py2.py3-none-any.whl (216 kB)
  Requirement already satisfied: sqlalchemy==1.3.* in /opt/app-root/lib/python3.6/site-packages (from -r requirements.txt (line 21)) (1.3.18)
  Collecting statsmodels==0.10.*
  Downloading statsmodels-0.10.2-cp36-cp36m-manylinux1_x86_64.whl (8.1 MB)
  Collecting sympy==1.4.*
  Downloading sympy-1.4-py2.py3-none-any.whl (5.3 MB)
  Collecting vincent==0.4.*
  Downloading vincent-0.4.4.tar.gz (29 kB)
  Collecting xlrd==1.2.*
  Downloading xlrd-1.2.0-py2.py3-none-any.whl (103 kB)
  Collecting soupsieve>=1.2
  Downloading soupsieve-2.0.1-py3-none-any.whl (32 kB)
  Requirement already satisfied: six>=1.5.2 in /opt/app-root/lib/python3.6/site-packages (from bokeh==1.3.->-r requirements.txt (line 4)) (1.15.0)
  Requirement already satisfied: PyYAML>=3.10 in /opt/app-root/lib/python3.6/site-packages (from bokeh==1.3.->-r requirements.txt (line 4)) (5.3.1)
  Requirement already satisfied: python-dateutil>=2.1 in /opt/app-root/lib/python3.6/site-packages (from bokeh==1.3.->-r requirements.txt (line 4)) (2.8.1)
  Requirement already satisfied: Jinja2>=2.7 in /opt/app-root/lib/python3.6/site-packages (from bokeh==1.3.->-r requirements.txt (line 4)) (2.11.2)
  Collecting numpy>=1.7.1
  Downloading numpy-1.19.0-cp36-cp36m-manylinux2010_x86_64.whl (14.6 MB)
  Collecting pillow>=4.0
  Downloading Pillow-7.2.0-cp36-cp36m-manylinux1_x86_64.whl (2.2 MB)
  Requirement already satisfied: packaging>=16.8 in /opt/app-root/lib/python3.6/site-packages (from bokeh==1.3.->-r requirements.txt (line 4)) (20.4)
  Requirement already satisfied: tornado>=4.3 in /opt/app-root/lib/python3.6/site-packages (from bokeh==1.3.->-r requirements.txt (line 4)) (6.0.3)
  Requirement already satisfied: traitlets>=4.3.1 in /opt/app-root/lib/python3.6/site-packages (from ipywidgets==7.5.->-r requirements.txt (line 10)) (4.3.3)
  Requirement already satisfied: ipykernel>=4.5.1 in /opt/app-root/lib/python3.6/site-packages (from ipywidgets==7.5.->-r requirements.txt (line 10)) (5.3.2)
  Requirement already satisfied: ipython>=4.0.0; python_version >= "3.3" in /opt/app-root/lib/python3.6/site-packages (from ipywidgets==7.5.->-r requirements.txt (line 10)) (7.16.1)
  Collecting widgetsnbextension~=3.5.0
  Downloading widgetsnbextension-3.5.1-py2.py3-none-any.whl (2.2 MB)
  Requirement already satisfied: nbformat>=4.2.0 in /opt/app-root/lib/python3.6/site-packages (from ipywidgets==7.5.->-r requirements.txt (line 10)) (5.0.7)
  Collecting cycler>=0.10
  Downloading cycler-0.10.0-py2.py3-none-any.whl (6.5 kB)
  Collecting kiwisolver>=1.0.1
  Downloading kiwisolver-1.2.0-cp36-cp36m-manylinux1_x86_64.whl (88 kB)
  Requirement already satisfied: pyparsing!=2.0.4,!=2.1.2,!=2.1.6,>=2.0.1 in /opt/app-root/lib/python3.6/site-packages (from matplotlib==3.1.->-r requirements.txt (line 11)) (2.4.7)
  Collecting llvmlite>=0.29.0dev0
  Downloading llvmlite-0.33.0-cp36-cp36m-manylinux1_x86_64.whl (18.3 MB)
  Collecting pytz>=2017.2
  Downloading pytz-2020.1-py2.py3-none-any.whl (510 kB)
  Requirement already satisfied: setuptools in /opt/app-root/lib/python3.6/site-packages (from protobuf==3.9.->-r requirements.txt (line 16)) (49.1.0)
  Collecting imageio>=2.0.1
  Downloading imageio-2.9.0-py3-none-any.whl (3.3 MB)
  Collecting networkx>=2.0
  Downloading networkx-2.4-py3-none-any.whl (1.6 MB)
  Collecting PyWavelets>=0.4.0
  Downloading PyWavelets-1.1.1-cp36-cp36m-manylinux1_x86_64.whl (4.4 MB)
  Collecting joblib>=0.11
  Downloading joblib-0.16.0-py3-none-any.whl (300 kB)
  Collecting mpmath>=0.19
  Downloading mpmath-1.1.0.tar.gz (512 kB)
  Requirement already satisfied: MarkupSafe>=0.23 in /opt/app-root/lib/python3.6/site-packages (from Jinja2>=2.7->bokeh==1.3.->-r requirements.txt (line 4)) (1.1.1)
  Requirement already satisfied: decorator in /opt/app-root/lib/python3.6/site-packages (from traitlets>=4.3.1->ipywidgets==7.5.->-r requirements.txt (line 10)) (4.4.2)
  Requirement already satisfied: ipython-genutils in /opt/app-root/lib/python3.6/site-packages (from traitlets>=4.3.1->ipywidgets==7.5.->-r requirements.txt (line 10)) (0.2.0)
  Requirement already satisfied: jupyter-client in /opt/app-root/lib/python3.6/site-packages (from ipykernel>=4.5.1->ipywidgets==7.5.->-r requirements.txt (line 10)) (6.1.5)
  Requirement already satisfied: pygments in /opt/app-root/lib/python3.6/site-packages (from ipython>=4.0.0; python_version >= "3.3"->ipywidgets==7.5.->-r requirements.txt (line 10)) (2.6.1)
  Requirement already satisfied: pexpect; sys_platform != "win32" in /opt/app-root/lib/python3.6/site-packages (from ipython>=4.0.0; python_version >= "3.3"->ipywidgets==7.5.->-r requirements.txt (line 10)) (4.8.0)
  Requirement already satisfied: backcall in /opt/app-root/lib/python3.6/site-packages (from ipython>=4.0.0; python_version >= "3.3"->ipywidgets==7.5.->-r requirements.txt (line 10)) (0.2.0)
  Requirement already satisfied: prompt-toolkit!=3.0.0,!=3.0.1,<3.1.0,>=2.0.0 in /opt/app-root/lib/python3.6/site-packages (from ipython>=4.0.0; python_version >= "3.3"->ipywidgets==7.5.->-r requirements.txt (line 10)) (3.0.5)
  Requirement already satisfied: jedi>=0.10 in /opt/app-root/lib/python3.6/site-packages (from ipython>=4.0.0; python_version >= "3.3"->ipywidgets==7.5.->-r requirements.txt (line 10)) (0.17.1)
  Requirement already satisfied: pickleshare in /opt/app-root/lib/python3.6/site-packages (from ipython>=4.0.0; python_version >= "3.3"->ipywidgets==7.5.->-r requirements.txt (line 10)) (0.7.5)
  Requirement already satisfied: notebook>=4.4.1 in /opt/app-root/lib/python3.6/site-packages (from widgetsnbextension~=3.5.0->ipywidgets==7.5.->-r requirements.txt (line 10)) (6.0.2)
  Requirement already satisfied: jsonschema!=2.5.0,>=2.4 in /opt/app-root/lib/python3.6/site-packages (from nbformat>=4.2.0->ipywidgets==7.5.->-r requirements.txt (line 10)) (3.2.0)
  Requirement already satisfied: jupyter-core in /opt/app-root/lib/python3.6/site-packages (from nbformat>=4.2.0->ipywidgets==7.5.->-r requirements.txt (line 10)) (4.6.3)
  Requirement already satisfied: pyzmq>=13 in /opt/app-root/lib/python3.6/site-packages (from jupyter-client->ipykernel>=4.5.1->ipywidgets==7.5.->-r requirements.txt (line 10)) (19.0.1)
  Requirement already satisfied: ptyprocess>=0.5 in /opt/app-root/lib/python3.6/site-packages (from pexpect; sys_platform != "win32"->ipython>=4.0.0; python_version >= "3.3"->ipywidgets==7.5.->-r requirements.txt (line 10)) (0.6.0)
  Requirement already satisfied: wcwidth in /opt/app-root/lib/python3.6/site-packages (from prompt-toolkit!=3.0.0,!=3.0.1,<3.1.0,>=2.0.0->ipython>=4.0.0; python_version >= "3.3"->ipywidgets==7.5.->-r requirements.txt (line 10)) (0.2.5)
  Requirement already satisfied: parso<0.8.0,>=0.7.0 in /opt/app-root/lib/python3.6/site-packages (from jedi>=0.10->ipython>=4.0.0; python_version >= "3.3"->ipywidgets==7.5.->-r requirements.txt (line 10)) (0.7.0)
  Requirement already satisfied: prometheus-client in /opt/app-root/lib/python3.6/site-packages (from notebook>=4.4.1->widgetsnbextension~=3.5.0->ipywidgets==7.5.->-r requirements.txt (line 10)) (0.8.0)
  Requirement already satisfied: nbconvert in /opt/app-root/lib/python3.6/site-packages (from notebook>=4.4.1->widgetsnbextension~=3.5.0->ipywidgets==7.5.->-r requirements.txt (line 10)) (5.6.1)
  Requirement already satisfied: Send2Trash in /opt/app-root/lib/python3.6/site-packages (from notebook>=4.4.1->widgetsnbextension~=3.5.0->ipywidgets==7.5.->-r requirements.txt (line 10)) (1.5.0)
  Requirement already satisfied: terminado>=0.8.1 in /opt/app-root/lib/python3.6/site-packages (from notebook>=4.4.1->widgetsnbextension~=3.5.0->ipywidgets==7.5.->-r requirements.txt (line 10)) (0.8.3)
  Requirement already satisfied: pyrsistent>=0.14.0 in /opt/app-root/lib/python3.6/site-packages (from jsonschema!=2.5.0,>=2.4->nbformat>=4.2.0->ipywidgets==7.5.->-r requirements.txt (line 10)) (0.16.0)
  Requirement already satisfied: attrs>=17.4.0 in /opt/app-root/lib/python3.6/site-packages (from jsonschema!=2.5.0,>=2.4->nbformat>=4.2.0->ipywidgets==7.5.->-r requirements.txt (line 10)) (19.3.0)
  Requirement already satisfied: importlib-metadata; python_version < "3.8" in /opt/app-root/lib/python3.6/site-packages (from jsonschema!=2.5.0,>=2.4->nbformat>=4.2.0->ipywidgets==7.5.->-r requirements.txt (line 10)) (1.7.0)
  Requirement already satisfied: mistune<2,>=0.8.1 in /opt/app-root/lib/python3.6/site-packages (from nbconvert->notebook>=4.4.1->widgetsnbextension~=3.5.0->ipywidgets==7.5.->-r requirements.txt (line 10)) (0.8.4)
  Requirement already satisfied: bleach in /opt/app-root/lib/python3.6/site-packages (from nbconvert->notebook>=4.4.1->widgetsnbextension~=3.5.0->ipywidgets==7.5.->-r requirements.txt (line 10)) (3.1.5)
  Requirement already satisfied: pandocfilters>=1.4.1 in /opt/app-root/lib/python3.6/site-packages (from nbconvert->notebook>=4.4.1->widgetsnbextension~=3.5.0->ipywidgets==7.5.->-r requirements.txt (line 10)) (1.4.2)
  Requirement already satisfied: entrypoints>=0.2.2 in /opt/app-root/lib/python3.6/site-packages (from nbconvert->notebook>=4.4.1->widgetsnbextension~=3.5.0->ipywidgets==7.5.->-r requirements.txt (line 10)) (0.3)
  Requirement already satisfied: testpath in /opt/app-root/lib/python3.6/site-packages (from nbconvert->notebook>=4.4.1->widgetsnbextension~=3.5.0->ipywidgets==7.5.->-r requirements.txt (line 10)) (0.4.4)
  Requirement already satisfied: defusedxml in /opt/app-root/lib/python3.6/site-packages (from nbconvert->notebook>=4.4.1->widgetsnbextension~=3.5.0->ipywidgets==7.5.->-r requirements.txt (line 10)) (0.6.0)
  Requirement already satisfied: zipp>=0.5 in /opt/app-root/lib/python3.6/site-packages (from importlib-metadata; python_version < "3.8"->jsonschema!=2.5.0,>=2.4->nbformat>=4.2.0->ipywidgets==7.5.->-r requirements.txt (line 10)) (3.1.0)
  Requirement already satisfied: webencodings in /opt/app-root/lib/python3.6/site-packages (from bleach->nbconvert->notebook>=4.4.1->widgetsnbextension~=3.5.0->ipywidgets==7.5.->-r requirements.txt (line 10)) (0.5.1)
  Building wheels for collected packages: bokeh, dill, vincent, mpmath
  Building wheel for bokeh (setup.py): started
  Building wheel for bokeh (setup.py): finished with status 'done'
  Created wheel for bokeh: filename=bokeh-1.3.4-py3-none-any.whl size=8546146 sha256=d34193ae6dc8694589c9fc5ff69aa562f88803ae4473bf9d3a6995da06d94a4f
  Stored in directory: /tmp/pip-ephem-wheel-cache-zxhz35rt/wheels/f0/c0/75/05fa5621d25ac27b3e4382188124924e7e5a113e0597eda10e
  Building wheel for dill (setup.py): started
  Building wheel for dill (setup.py): finished with status 'done'
  Created wheel for dill: filename=dill-0.3.2-py3-none-any.whl size=78912 sha256=442fc5e7ff2ceb10bfa0985e4022611f684e86e38403de02c0f32d9dc4d8a6c0
  Stored in directory: /tmp/pip-ephem-wheel-cache-zxhz35rt/wheels/02/49/cf/660924cd9bc5fcddc3a0246fe39800c83028d3ccea244de352
  Building wheel for vincent (setup.py): started
  Building wheel for vincent (setup.py): finished with status 'done'
  Created wheel for vincent: filename=vincent-0.4.4-py3-none-any.whl size=35167 sha256=d98054b95bbeb83ad35652043ef28a09b526242f65b72fa76a72c2fa5668551a
  Stored in directory: /tmp/pip-ephem-wheel-cache-zxhz35rt/wheels/ed/29/88/7cef7b5ec388edf25dc36e5eafb08d7f2ef0b4da19b4b4e14a
  Building wheel for mpmath (setup.py): started
  Building wheel for mpmath (setup.py): finished with status 'done'
  Created wheel for mpmath: filename=mpmath-1.1.0-py3-none-any.whl size=532239 sha256=8b53ccb19ff59517bea003f2c3caab77ade088d5a5d48956de12df0a6d562aa5
  Stored in directory: /tmp/pip-ephem-wheel-cache-zxhz35rt/wheels/e8/38/69/aa17553ad31f09ff5fa44c8a1a6c5b47e7c9261e9c7c16b9fb
  Successfully built bokeh dill vincent mpmath
  Installing collected packages: soupsieve, beautifulsoup4, numpy, pillow, bokeh, cloudpickle, cython, dill, h5py, widgetsnbextension, ipywidgets, cycler, kiwisolver, matplotlib, llvmlite, numba, numexpr, pytz, pandas, patsy, protobuf, scipy, imageio, networkx, PyWavelets, scikit-image, joblib, scikit-learn, seaborn, statsmodels, mpmath, sympy, vincent, xlrd
  Attempting uninstall: cloudpickle
  Found existing installation: cloudpickle 1.5.0
  Uninstalling cloudpickle-1.5.0:
  Successfully uninstalled cloudpickle-1.5.0
  Successfully installed PyWavelets-1.1.1 beautifulsoup4-4.8.2 bokeh-1.3.4 cloudpickle-1.2.2 cycler-0.10.0 cython-0.29.21 dill-0.3.2 h5py-2.9.0 imageio-2.9.0 ipywidgets-7.5.1 joblib-0.16.0 kiwisolver-1.2.0 llvmlite-0.33.0 matplotlib-3.1.3 mpmath-1.1.0 networkx-2.4 numba-0.45.1 numexpr-2.6.9 numpy-1.19.0 pandas-0.25.3 patsy-0.5.1 pillow-7.2.0 protobuf-3.9.2 pytz-2020.1 scikit-image-0.15.0 scikit-learn-0.21.3 scipy-1.3.3 seaborn-0.9.1 soupsieve-2.0.1 statsmodels-0.10.2 sympy-1.4 vincent-0.4.4 widgetsnbextension-3.5.1 xlrd-1.2.0

• '[' x '!=' x ']'

• jupyter nbextension enable --py widgetsnbextension --sys-prefix
  Enabling notebook extension jupyter-js-widgets/extension...
  - Validating: �[32mOK�[0m

• jupyter labextension install '@jupyter-widgets/jupyterlab-manager@^1.0.1' --no-build
  -�\�|�/�-�\�|�/�-�\�|�+ jupyter labextension install jupyterlab_bokeh@1.0.0 --no-build
  -�\�|�/�-�\�|�/�-�\�|�+ jupyter lab build
  [LabBuildApp] JupyterLab 1.2.3
  [LabBuildApp] Building in /opt/app-root/share/jupyter/lab
  [LabBuildApp] Building jupyterlab assets (build:prod:minimize)
  -�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�-�\�|�/�-�\�|�/�-�\�|�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�/�-�\�|�+ cd /tmp

• git clone https://github.com/PAIR-code/facets.git
  Cloning into 'facets'...

• cd facets

• jupyter nbextension install facets-dist/ --sys-prefix
  Making directory: /opt/app-root/share/jupyter/nbextensions/facets-dist/
  Copying: /tmp/facets/facets-dist/facets-jupyter.html -> /opt/app-root/share/jupyter/nbextensions/facets-dist/facets-jupyter.html

  To initialize this nbextension in the browser every time the notebook (or other app) loads:

      jupyter nbextension enable <the entry point> --sys-prefix
  

• cd /opt/app-root/src

• rm -rf /tmp/facets

• MPLBACKEND=Agg

• python -c 'import matplotlib.pyplot'

• fix-permissions /opt/app-root
  STEP 10: CMD /usr/libexec/s2i/run
  STEP 11: COMMIT temp.builder.openshift.io/custom-namespace/s2i-scipy-notebook-py36-1:31b06186
  Getting image source signatures
  Copying blob sha256:35817540a17b5b90cb4426078d53813b16e70c75e1cce3db116d2fbbca7fbf10
  Copying blob sha256:c7fbe90ae90e9c6452e5d809f069907907e6f32532565104921f600fb956306c
  Copying blob sha256:74d760a83a4b8bcb3d01e7726e06c11469f0bb2ce4645474cb91a607c27bf482
  Copying blob sha256:a81014d91c9e1e50df402fa41d22d9965a3690e0ca10951fa2937c99d6e76d52
  Copying blob sha256:be62003aa03127bf920a41b2527a002bd72b0f5ad8a43c54fcfb32c0cf8962fc
  Copying blob sha256:0511d18c91c1a7b854da40cc387a31eea50b381d0a1e907ae66b5098d2a36912
  Copying blob sha256:56f9c969c0265bdb920b12db283a1be54e84445d8f4abb71627894744daff78a
  Copying config sha256:16e589a7d0c21d90f7ca665f1f8fbce02c945b1c867c67bee9a948eec453de9d
  Writing manifest to image destination
  Storing signatures
  16e589a7d0c21d90f7ca665f1f8fbce02c945b1c867c67bee9a948eec453de9d
  16e589a7d0c21d90f7ca665f1f8fbce02c945b1c867c67bee9a948eec453de9d

Pushing image image-registry.openshift-image-registry.svc:5000/custom-namespace/s2i-scipy-notebook:3.6 ...
Getting image source signatures
Copying blob sha256:84e620d0abe585d05a7bed55144af0bc5efe083aed05eac1e88922034ddf1ed2
Copying blob sha256:6a4fa4bc2d06e942c0e92d69614b4ee30c2d409c95f29a3a22ece8087ce164be
Copying blob sha256:c8106f599d69375cbfc2ef44b11812ddc33938ab1e94860b02c262118f837611
Copying blob sha256:bb13d92caffa705f32b8a7f9f661e07ddede310c6ccfa78fb53a49539740e29b
Copying blob sha256:455ea8ab06218495bbbcb14b750a0d644897b24f8c5dcf9e8698e27882583412
Copying blob sha256:d796d9c455b3bb7953bfc479ad682ad206dc1fed8dda0feff247ce5ae2b7f7ef
Copying blob sha256:56f9c969c0265bdb920b12db283a1be54e84445d8f4abb71627894744daff78a
Copying config sha256:16e589a7d0c21d90f7ca665f1f8fbce02c945b1c867c67bee9a948eec453de9d
Writing manifest to image destination
Storing signatures
Successfully pushed image-registry.openshift-image-registry.svc:5000/custom-namespace/s2i-scipy-notebook@sha256:3d391f19e46c5943a74444bda0dd42dd2efa0dc5a6890c79aab0fc4e84d02db2
Push successful

==================================================================================

oc process -f openshift-jupyter-dc-template.yaml -p APPLICATION_NAME=scipy-notebook -p NOTEBOOK_IMAGE='s2i-scipy-notebook:3.6' -p SUPPLEMENTAL_GROUPS=200300 -p NOTEBOOK_PASSWORD=secret -p VOLUME_SIZE=5Gi | oc create -f -

The set-up volume takes a while to run. I had to configure timeoutSeconds more than 600 seconds for it to complete. Not sure the log of set-up volume is required.

Any help to resolve this issue is greatly appreciated.

Thanks
-Arun

[GrahamDumpleton]

What is the definition of the container for the deployment in:

• openshift-jupyter-dc-template.yaml

Looks to me like you are overriding the start command for the container and not using the default the image sets up.

[aagara]

I used the notebook-workspace.json as the base template and added one more parameter. The start command is only for the initialization container. Below is the entire yaml. Please let me know if something I have modified is incorrect.

---

kind: Template
apiVersion: template.openshift.io/v1
metadata:
name: notebook-workspace
annotations:
openshift.io/display-name: Jupyter Notebook Workspace
description: Template for deploying Jupyter Notebook images with persistent storage
and webdav filesystem access.
iconClass: icon-python
tags: python,jupyter
parameters:

• name: APPLICATION_NAME
  value: custom-notebook
  required: true
• name: NOTEBOOK_IMAGE
  value: s2i-minimal-notebook:3.6
  required: true
• name: NOTEBOOK_PASSWORD
  value: ''
  required: true
• name: NOTEBOOK_INTERFACE
  value: classic
• name: NOTEBOOK_MEMORY
  value: 512Mi
  required: true
• name: VOLUME_SIZE
  value: 1Gi
  required: true
• name: SUPPLEMENTAL_GROUPS
  required: true
  objects:
• kind: DeploymentConfig
  apiVersion: apps.openshift.io/v1
  metadata:
  name: "${APPLICATION_NAME}"
  labels:
  app: "${APPLICATION_NAME}"
  spec:
  strategy:
  type: Recreate
  triggers:
  • type: ConfigChange
  • type: ImageChange
    imageChangeParams:
    automatic: true
    containerNames:
    • setup-volume
    • notebook
      from:
      kind: ImageStreamTag
      name: "${NOTEBOOK_IMAGE}"
      replicas: 1
      selector:
      app: "${APPLICATION_NAME}"
      deploymentconfig: "${APPLICATION_NAME}"
      template:
      metadata:
      labels:
      app: "${APPLICATION_NAME}"
      deploymentconfig: "${APPLICATION_NAME}"
      spec:
      securityContext:
      supplementalGroups:
      • ${{SUPPLEMENTAL_GROUPS}}
        volumes:
    • name: data
      persistentVolumeClaim:
      claimName: "${APPLICATION_NAME}-data"
      initContainers:
    • name: setup-volume
      image: "${NOTEBOOK_IMAGE}"
      command: ['sh', '-c', "setup-volume.sh /opt/app-root /mnt/app-root"]
      resources:
      limits:
      memory: 256Mi
      volumeMounts:
      • name: data
        mountPath: "/mnt"
        containers:
    • name: notebook
      image: "${NOTEBOOK_IMAGE}"
      ports:
      • containerPort: 8080
        protocol: TCP
      • containerPort: 8081
        protocol: TCP
        resources:
        limits:
        memory: "${NOTEBOOK_MEMORY}"
        volumeMounts:
      • name: data
        mountPath: "/opt/app-root"
        subPath: app-root
        env:
      • name: JUPYTER_NOTEBOOK_PASSWORD
        value: "${NOTEBOOK_PASSWORD}"
      • name: JUPYTER_NOTEBOOK_INTERFACE
        value: "${NOTEBOOK_INTERFACE}"
      • name: JUPYTER_ENABLE_WEBDAV
        value: 'true'
        automountServiceAccountToken: false
• kind: PersistentVolumeClaim
  apiVersion: v1
  metadata:
  name: "${APPLICATION_NAME}-data"
  labels:
  app: "${APPLICATION_NAME}"
  spec:
  accessModes:
  • ReadWriteOnce
    resources:
    requests:
    storage: "${VOLUME_SIZE}"
• kind: Service
  apiVersion: v1
  metadata:
  name: "${APPLICATION_NAME}"
  labels:
  app: "${APPLICATION_NAME}"
  spec:
  ports:
  • name: 8080-tcp
    protocol: TCP
    port: 8080
    targetPort: 8080
  • name: 8081-tcp
    protocol: TCP
    port: 8081
    targetPort: 8081
    selector:
    app: "${APPLICATION_NAME}"
    deploymentconfig: "${APPLICATION_NAME}"
• kind: Route
  apiVersion: route.openshift.io/v1
  metadata:
  name: "${APPLICATION_NAME}"
  labels:
  app: "${APPLICATION_NAME}"
  spec:
  host: ''
  to:
  kind: Service
  name: "${APPLICATION_NAME}"
  weight: 100
  port:
  targetPort: 8080-tcp
  tls:
  termination: edge
  insecureEdgeTerminationPolicy: Redirect