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jotechjotech
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updated toy data
- some toy model files were still build with an older version of gapseq which caused problems with some examples from the usage
1 parent d81fd6b commit 11c3011

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+67794
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‎toy/ecoli-Transporter.tbl‎

Lines changed: 8 additions & 8 deletions
Original file line numberDiff line numberDiff line change
@@ -1,5 +1,5 @@
1-
# gapseq version: 1.3.1 cb94bcc
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# Transporter sequence DB md5sum: b99a77e (2022-02-04)
1+
# gapseq version: 1.4.0 a0b13801
2+
# Transporter sequence DB md5sum: b99a77e (2024-11-09)
33
id tc sub exid rea qseqid pident evalue bitscore qcovs stitle sstart send comment
44
gnl|TC-DB|P76298|1.A.104.1.1 1.A.104.1.1 sodium EX_cpd00971_e0 rxn34393,rxn34515,rxn10899 gnl|TC-DB|P76298|1.A.104.1.1 100.000 0.0 1380 100 NP_416393.1 flagellar biosynthesis protein FlhA [Escherichia coli str. K-12 substr. MG1655] 1 692 transporter
55
gnl|TC-DB|AET84893|1.A.1.12.5 1.A.1.12.5 potassium EX_cpd00205_e0 rxn05206,rxn27350 gnl|TC-DB|AET84893|1.A.1.12.5 24.390 2.8 23.5 85 NP_418497.1 putative menaquinol-cytochrome c reductase subunit NrfD [Escherichia coli str. K-12 substr. MG1655] 155 235 transporter
@@ -492,7 +492,7 @@ gnl|TC-DB|P24077|2.A.1.38.1 2.A.1.38.1 arabinose EX_cpd00224_e0 rxn05500,rxn0814
492492
gnl|TC-DB|P0AGC0|2.A.1.4.1 2.A.1.4.1 glycerol EX_cpd00100_e0 rxn12529,rxn34380 gnl|TC-DB|P0AGC0|2.A.1.4.1 100.000 0.0 933 100 NP_418122.1 hexose-6-phosphate:phosphate antiporter [Escherichia coli str. K-12 substr. MG1655] 1 463 transporter
493493
gnl|TC-DB|P0AGC0|2.A.1.4.1 2.A.1.4.1 phosphate EX_cpd00009_e0 rxn05210,rxn05312,rxn05313,rxn09120,rxn09723,rxn09811,rxn09833,rxn09872,rxn12450,rxn34261,rxn34397,rxn34522 gnl|TC-DB|P0AGC0|2.A.1.4.1 100.000 0.0 933 100 NP_418122.1 hexose-6-phosphate:phosphate antiporter [Escherichia coli str. K-12 substr. MG1655] 1 463 transporter
494494
gnl|TC-DB|P0AGC0|2.A.1.4.1 2.A.1.4.1 propionate EX_cpd00141_e0 rxn05634,rxn09171 gnl|TC-DB|P0AGC0|2.A.1.4.1 100.000 0.0 933 100 NP_418122.1 hexose-6-phosphate:phosphate antiporter [Escherichia coli str. K-12 substr. MG1655] 1 463 transporter
495-
gnl|TC-DB|O69759|2.A.1.4.10 2.A.1.4.10 propionate EX_cpd00141_e0 rxn05634,rxn09171 gnl|TC-DB|O69759|2.A.1.4.10 24.709 4.02e-21 92.0 97 NP_418123.2 inner membrane protein sensing glucose-6-phosphate [Escherichia coli str. K-12 substr. MG1655] 15 428 transporter
495+
gnl|TC-DB|O69759|2.A.1.4.10 2.A.1.4.10 propionate EX_cpd00141_e0 rxn05634,rxn09171 gnl|TC-DB|O69759|2.A.1.4.10 24.060 2.15e-21 92.8 90 NP_416743.1 sn-glycerol 3-phosphate:phosphate antiporter [Escherichia coli str. K-12 substr. MG1655] 22 412 transporter
496496
gnl|TC-DB|Q9ZE92|2.A.1.4.11 2.A.1.4.11 glycerol EX_cpd00100_e0 rxn12529,rxn34380 gnl|TC-DB|Q9ZE92|2.A.1.4.11 34.118 1.23e-87 271 97 NP_416743.1 sn-glycerol 3-phosphate:phosphate antiporter [Escherichia coli str. K-12 substr. MG1655] 10 428 transporter
497497
gnl|TC-DB|Q9ZE92|2.A.1.4.11 2.A.1.4.11 phosphate EX_cpd00009_e0 rxn05210,rxn05312,rxn05313,rxn09120,rxn09723,rxn09811,rxn09833,rxn09872,rxn12450,rxn34261,rxn34397,rxn34522 gnl|TC-DB|Q9ZE92|2.A.1.4.11 34.118 1.23e-87 271 97 NP_416743.1 sn-glycerol 3-phosphate:phosphate antiporter [Escherichia coli str. K-12 substr. MG1655] 10 428 transporter
498498
gnl|TC-DB|P33231|2.A.14.1.1 2.A.14.1.1 glycolate EX_cpd00139_e0 rxn05470,rxn08651,rxn08652,rxn12367 gnl|TC-DB|P33231|2.A.14.1.1 100.000 0.0 1088 100 NP_418060.1 lactate/glycolate:H(+) symporter LldP [Escherichia coli str. K-12 substr. MG1655] 1 551 transporter
@@ -955,7 +955,7 @@ gnl|TC-DB|P25527|2.A.3.1.4 2.A.3.1.4 gamma-aminobutyric acid EX_cpd00281_e0 rxn0
955955
gnl|TC-DB|P46349|2.A.3.1.5 2.A.3.1.5 alanine EX_cpd00035_e0 rxn05215,rxn05496,rxn08101,rxn08102,rxn34464,rxn34465,rxn34485,rxn34486 gnl|TC-DB|P46349|2.A.3.1.5 49.011 1.80e-145 421 96 NP_417149.1 4-aminobutanoate:H(+) symporter [Escherichia coli str. K-12 substr. MG1655] 1 454 transporter
956956
gnl|TC-DB|P46349|2.A.3.1.5 2.A.3.1.5 gamma-aminobutyric acid EX_cpd00281_e0 rxn05564,rxn08027,rxn12377,rxn34350,rxn34477 gnl|TC-DB|P46349|2.A.3.1.5 49.011 1.80e-145 421 96 NP_417149.1 4-aminobutanoate:H(+) symporter [Escherichia coli str. K-12 substr. MG1655] 1 454 transporter
957957
gnl|TC-DB|P46349|2.A.3.1.5 2.A.3.1.5 proline EX_cpd00129_e0 rxn05221,rxn05638,rxn09191,rxn09192,rxn12451,rxn34526,rxn34527 gnl|TC-DB|P46349|2.A.3.1.5 49.011 1.80e-145 421 96 NP_417149.1 4-aminobutanoate:H(+) symporter [Escherichia coli str. K-12 substr. MG1655] 1 454 transporter
958-
gnl|TC-DB|P37460|2.A.3.1.6 2.A.3.1.6 proline EX_cpd00129_e0 rxn05221,rxn05638,rxn09191,rxn09192,rxn12451,rxn34526,rxn34527 gnl|TC-DB|P37460|2.A.3.1.6 95.824 0.0 826 99 NP_414936.1 putative transporter ProY [Escherichia coli str. K-12 substr. MG1655] 1 455 transporter
958+
gnl|TC-DB|P37460|2.A.3.1.6 2.A.3.1.6 proline EX_cpd00129_e0 rxn05221,rxn05638,rxn09191,rxn09192,rxn12451,rxn34526,rxn34527 gnl|TC-DB|P37460|2.A.3.1.6 95.824 0.0 880 99 NP_414936.1 putative transporter ProY [Escherichia coli str. K-12 substr. MG1655] 1 455 transporter
959959
gnl|TC-DB|P0AAE0|2.A.3.1.7 2.A.3.1.7 D-alanine EX_cpd00117_e0 rxn05494,rxn08301,rxn13660 gnl|TC-DB|P0AAE0|2.A.3.1.7 100.000 0.0 944 100 NP_418629.1 D-serine/alanine/glycine/:H(+)symporter [Escherichia coli str. K-12 substr. MG1655] 1 470 transporter
960960
gnl|TC-DB|P0AAE0|2.A.3.1.7 2.A.3.1.7 D-serine EX_cpd00550_e0 rxn05649,rxn08372 gnl|TC-DB|P0AAE0|2.A.3.1.7 100.000 0.0 944 100 NP_418629.1 D-serine/alanine/glycine/:H(+)symporter [Escherichia coli str. K-12 substr. MG1655] 1 470 transporter
961961
gnl|TC-DB|P0AAE0|2.A.3.1.7 2.A.3.1.7 glycine EX_cpd00033_e0 rxn05582,rxn08660,rxn08661,rxn09748,rxn10537,rxn12379,rxn34381,rxn34382,rxn34466,rxn34502 gnl|TC-DB|P0AAE0|2.A.3.1.7 100.000 0.0 944 100 NP_418629.1 D-serine/alanine/glycine/:H(+)symporter [Escherichia coli str. K-12 substr. MG1655] 1 470 transporter
@@ -1543,8 +1543,8 @@ gnl|TC-DB|P11667|2.A.75.1.2 2.A.75.1.2 lysine EX_cpd00039_e0 rxn05305,rxn08854,r
15431543
gnl|TC-DB|P27125|2.A.7.6.1 2.A.7.6.1 L-rhamnose EX_cpd00396_e0 rxn05646,rxn09230 gnl|TC-DB|P27125|2.A.7.6.1 100.000 0.0 684 100 NP_418343.1 rhamnose/lyxose:H(+) symporter [Escherichia coli str. K-12 substr. MG1655] 1 344 transporter
15441544
gnl|TC-DB|P0AG34|2.A.76.1.1 2.A.76.1.1 L-threonine EX_cpd00161_e0 rxn05300,rxn09304,rxn09305,rxn09306,rxn09710,rxn10186,rxn12456,rxn13747,rxn34409,rxn34410,rxn34535 gnl|TC-DB|P0AG34|2.A.76.1.1 100.000 2.06e-148 407 100 YP_026265.1 L-homoserine/L-homoserine lactone/L-threonine exporter [Escherichia coli str. K-12 substr. MG1655] 1 206 transporter
15451545
gnl|TC-DB|P0AG34|2.A.76.1.1 2.A.76.1.1 serine EX_cpd00054_e0 rxn05307,rxn09246,rxn09247,rxn09714,rxn10185,rxn34404,rxn34405,rxn34530 gnl|TC-DB|P0AG34|2.A.76.1.1 100.000 2.06e-148 407 100 YP_026265.1 L-homoserine/L-homoserine lactone/L-threonine exporter [Escherichia coli str. K-12 substr. MG1655] 1 206 transporter
1546-
gnl|TC-DB|G8WDN4|2.A.76.1.10 2.A.76.1.10 L-threonine EX_cpd00161_e0 rxn05300,rxn09304,rxn09305,rxn09306,rxn09710,rxn10186,rxn12456,rxn13747,rxn34409,rxn34410,rxn34535 gnl|TC-DB|G8WDN4|2.A.76.1.10 27.168 3.51e-15 68.2 82 YP_026265.1 L-homoserine/L-homoserine lactone/L-threonine exporter [Escherichia coli str. K-12 substr. MG1655] 9 178 transporter
1547-
gnl|TC-DB|G8WDN4|2.A.76.1.10 2.A.76.1.10 serine EX_cpd00054_e0 rxn05307,rxn09246,rxn09247,rxn09714,rxn10185,rxn34404,rxn34405,rxn34530 gnl|TC-DB|G8WDN4|2.A.76.1.10 27.168 3.51e-15 68.2 82 YP_026265.1 L-homoserine/L-homoserine lactone/L-threonine exporter [Escherichia coli str. K-12 substr. MG1655] 9 178 transporter
1546+
gnl|TC-DB|G8WDN4|2.A.76.1.10 2.A.76.1.10 L-threonine EX_cpd00161_e0 rxn05300,rxn09304,rxn09305,rxn09306,rxn09710,rxn10186,rxn12456,rxn13747,rxn34409,rxn34410,rxn34535 gnl|TC-DB|G8WDN4|2.A.76.1.10 25.628 3.17e-15 68.6 94 NP_416312.1 leucine exporter [Escherichia coli str. K-12 substr. MG1655] 12 208 transporter
1547+
gnl|TC-DB|G8WDN4|2.A.76.1.10 2.A.76.1.10 serine EX_cpd00054_e0 rxn05307,rxn09246,rxn09247,rxn09714,rxn10185,rxn34404,rxn34405,rxn34530 gnl|TC-DB|G8WDN4|2.A.76.1.10 25.628 3.17e-15 68.6 94 NP_416312.1 leucine exporter [Escherichia coli str. K-12 substr. MG1655] 12 208 transporter
15481548
gnl|TC-DB|P0AG38|2.A.76.1.2 2.A.76.1.2 L-threonine EX_cpd00161_e0 rxn05300,rxn09304,rxn09305,rxn09306,rxn09710,rxn10186,rxn12456,rxn13747,rxn34409,rxn34410,rxn34535 gnl|TC-DB|P0AG38|2.A.76.1.2 100.000 4.18e-150 412 100 YP_026264.1 L-threonine exporter [Escherichia coli str. K-12 substr. MG1655] 1 206 transporter
15491549
gnl|TC-DB|P38101|2.A.76.1.4 2.A.76.1.4 cysteine EX_cpd00084_e0 rxn09690 gnl|TC-DB|P38101|2.A.76.1.4 100.000 3.65e-141 388 100 NP_417073.1 cysteine/O-acetylserine exporter EamB [Escherichia coli str. K-12 substr. MG1655] 1 195 transporter
15501550
gnl|TC-DB|P76249|2.A.76.1.5 2.A.76.1.5 leucine EX_cpd00107_e0 rxn05240,rxn05243,rxn08785,rxn13339,rxn13340,rxn29053,rxn29140,rxn34387,rxn34508 gnl|TC-DB|P76249|2.A.76.1.5 100.000 5.59e-153 419 100 NP_416312.1 leucine exporter [Escherichia coli str. K-12 substr. MG1655] 1 212 transporter
@@ -1930,7 +1930,7 @@ gnl|TC-DB|O05176|3.A.1.2.5 3.A.1.2.5 galactose EX_cpd00108_e0 rxn05162,rxn08573
19301930
gnl|TC-DB|O05176|3.A.1.2.5 3.A.1.2.5 glucose EX_cpd00027_e0 rxn05147,rxn08606 gnl|TC-DB|O05176|3.A.1.2.5 48.323 1.67e-156 452 98 NP_418024.1 xylose ABC transporter ATP binding subunit [Escherichia coli str. K-12 substr. MG1655] 4 504 transporter
19311931
gnl|TC-DB|O05176|3.A.1.2.5 3.A.1.2.5 xylose EX_cpd00154_e0 rxn05167,rxn09383 gnl|TC-DB|O05176|3.A.1.2.5 48.323 1.67e-156 452 98 NP_418024.1 xylose ABC transporter ATP binding subunit [Escherichia coli str. K-12 substr. MG1655] 4 504 transporter
19321932
gnl|TC-DB|Q6GUB2|3.A.1.25.1 3.A.1.25.1 biotin EX_cpd00104_e0 rxn05223 gnl|TC-DB|Q6GUB2|3.A.1.25.1 30.516 4.11e-24 95.5 88 NP_415376.4 putrescine ABC transporter ATP binding subunit [Escherichia coli str. K-12 substr. MG1655] 28 228 transporter
1933-
gnl|TC-DB|Q2FUL5|3.A.1.25.2 3.A.1.25.2 biotin EX_cpd00104_e0 rxn05223 gnl|TC-DB|Q2FUL5|3.A.1.25.2 29.442 8.87e-16 72.4 79 NP_418459.1 maltose ABC transporter ATP binding subunit [Escherichia coli str. K-12 substr. MG1655] 23 214 transporter
1933+
gnl|TC-DB|Q2FUL5|3.A.1.25.2 3.A.1.25.2 biotin EX_cpd00104_e0 rxn05223 gnl|TC-DB|Q2FUL5|3.A.1.25.2 27.670 6.71e-16 72.8 84 NP_415644.1 spermidine preferential ABC transporter ATP binding subunit [Escherichia coli str. K-12 substr. MG1655] 23 228 transporter
19341934
gnl|TC-DB|A2SPQ4|3.A.1.25.3 3.A.1.25.3 biotin EX_cpd00104_e0 rxn05223 gnl|TC-DB|A2SPQ4|3.A.1.25.3 29.885 3.63e-17 73.6 84 NP_415635.4 lipoprotein release complex - ATP binding subunit [Escherichia coli str. K-12 substr. MG1655] 22 188 transporter
19351935
gnl|TC-DB|A2RI01|3.A.1.25.4 3.A.1.25.4 biotin EX_cpd00104_e0 rxn05223 gnl|TC-DB|A2RI01|3.A.1.25.4 33.992 3.04e-40 139 90 NP_414741.1 L-methionine/D-methionine ABC transporter ATP binding subunit [Escherichia coli str. K-12 substr. MG1655] 12 253 transporter
19361936
gnl|TC-DB|Q9X1Z1|3.A.1.25.5 3.A.1.25.5 biotin EX_cpd00104_e0 rxn05223 gnl|TC-DB|Q9X1Z1|3.A.1.25.5 33.195 3.77e-32 117 89 NP_414741.1 L-methionine/D-methionine ABC transporter ATP binding subunit [Escherichia coli str. K-12 substr. MG1655] 21 255 transporter
@@ -2262,7 +2262,7 @@ gnl|TC-DB|P0C2V3|3.A.6.1.1 3.A.6.1.1 calcium EX_cpd00063_e0 rxn05513,rxn10447,rx
22622262
gnl|TC-DB|O84092|3.A.6.3.1 3.A.6.3.1 Calcium EX_cpd00063_e0 rxn05513,rxn10447,rxn27351,rxn27352,rxn27353,rxn27614,rxn27615,rxn29073,rxn29074,rxn35678,rxn37862 gnl|TC-DB|O84092|3.A.6.3.1 35.435 5.38e-118 366 93 NP_416393.1 flagellar biosynthesis protein FlhA [Escherichia coli str. K-12 substr. MG1655] 34 677 transporter
22632263
gnl|TC-DB|Q57490|3.B.1.1.2 3.B.1.1.2 sodium EX_cpd00971_e0 rxn05622,rxn34391,rxn34513 gnl|TC-DB|Q57490|3.B.1.1.2 26.415 1.8 22.7 82 NP_415475.1 putative ATP-dependent protease YcbZ [Escherichia coli str. K-12 substr. MG1655] 432 484 transporter
22642264
gnl|TC-DB|Q9ZAA7|3.B.1.1.3 3.B.1.1.3 sodium EX_cpd00971_e0 rxn05622,rxn34391,rxn34513 gnl|TC-DB|Q9ZAA7|3.B.1.1.3 36.620 4.00e-13 60.1 92 NP_417721.1 biotin carboxyl carrier protein [Escherichia coli str. K-12 substr. MG1655] 18 155 transporter
2265-
gnl|TC-DB|O06930|3.B.1.1.4 3.B.1.1.4 sodium EX_cpd00971_e0 rxn05622,rxn34391,rxn34513 gnl|TC-DB|O06930|3.B.1.1.4 42.373 3.10e-08 45.1 86 NP_414657.1 pyruvate dehydrogenase, E2 subunit [Escherichia coli str. K-12 substr. MG1655] 221 279 transporter
2265+
gnl|TC-DB|O06930|3.B.1.1.4 3.B.1.1.4 sodium EX_cpd00971_e0 rxn05622,rxn34391,rxn34513 gnl|TC-DB|O06930|3.B.1.1.4 38.983 2.81e-08 45.4 86 NP_414657.1 pyruvate dehydrogenase, E2 subunit [Escherichia coli str. K-12 substr. MG1655] 120 178 transporter
22662266
gnl|TC-DB|Q9V0A6|3.B.1.1.5 3.B.1.1.5 sodium EX_cpd00971_e0 rxn05622,rxn34391,rxn34513 gnl|TC-DB|Q9V0A6|3.B.1.1.5 24.648 0.004 33.1 95 NP_416161.4 putative membrane fusion protein YdhJ [Escherichia coli str. K-12 substr. MG1655] 51 182 transporter
22672267
gnl|TC-DB|B7TVP4|3.B.1.1.7 3.B.1.1.7 sodium EX_cpd00971_e0 rxn05622,rxn34391,rxn34513 gnl|TC-DB|B7TVP4|3.B.1.1.7 39.583 3.30e-14 63.2 91 NP_417721.1 biotin carboxyl carrier protein [Escherichia coli str. K-12 substr. MG1655] 20 156 transporter
22682268
gnl|TC-DB|Q50773|3.C.1.1.1 3.C.1.1.1 sodium EX_cpd00971_e0 rxn05622,rxn34391,rxn34513 gnl|TC-DB|Q50773|3.C.1.1.1 28.070 1.3 23.5 79 NP_418464.1 4-hydroxybenzoate octaprenyltransferase [Escherichia coli str. K-12 substr. MG1655] 174 230 transporter

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