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Handle potential EC conflict between 1.1.2.3 and 1.1.3.2

Waschinapushed 3 commits to batch_alignment_tests • 6f41551…b7f59e7 • 
6 days ago

Added lactate oxidase (EC 1.1.3.2) to biochemistry DB

Waschinapushed 1 commit to batch_alignment_tests • e5c8866…6f41551 • 
on Sep 1

Removing cross-feeding tutorial for now

Waschinapushed 2 commits to batch_alignment_tests • 0100c3b…e5c8866 • 
on Aug 29

Update medium prediction

Waschinapushed 1 commit to batch_alignment_tests • 663a177…0100c3b • 
on Aug 29

Updated install docs

Waschinapushed 1 commit to batch_alignment_tests • 943dc9b…663a177 • 
on Aug 29

Option to specify custom directory for ref. sequence database

Waschinapushed 1 commit to batch_alignment_tests • 2733b48…943dc9b • 
on Aug 29

Small addition to previous commit

Waschinapushed 1 commit to batch_alignment_tests • 9b90aca…2733b48 • 
on Aug 28

EC 1.3.1.110 transferred to EC 1.1.1.436

Waschinapushed 1 commit to batch_alignment_tests • e4c8db6…9b90aca • 
on Aug 28

Omit option "-a" in gapseq find

Waschinapushed 1 commit to batch_alignment_tests • d322e97…e4c8db6 • 
on Aug 27

Enabling option for offline mode in 'doall'

Waschinapushed 1 commit to batch_alignment_tests • 12c8bc0…d322e97 • 
on Aug 26

Updated custom pwy DB and medium prediction

Waschinapushed 1 commit to batch_alignment_tests • 47d72fd…12c8bc0 • 
on Aug 26

Biochemistry DB Update - Methanofuran Biosynthesis

Waschinapushed 1 commit to batch_alignment_tests • a661322…47d72fd • 
on Aug 25

Biochemistry DB update (some archaeal pathways)

Waschinapushed 1 commit to batch_alignment_tests • db0c656…a661322 • 
on Aug 24

Added missing reaction in archael CoA-biosynthesis

Waschinapushed 1 commit to batch_alignment_tests • 5db6657…db0c656 • 
on Aug 23

Corrected EC number in custom pathway

Waschinapushed 1 commit to batch_alignment_tests • e3ad402…5db6657 • 
on Aug 22

Biochem DB update

Waschinapushed 2 commits to batch_alignment_tests • 5f6af7a…e3ad402 • 
on Aug 22

Added missing reaction for sulfur reduction

Waschinapushed 1 commit to batch_alignment_tests • 9c076bb…5f6af7a • 
on Aug 22

Update documentation

Waschinapushed 1 commit to batch_alignment_tests • 8e203ac…9c076bb • 
on Aug 21

Bug fix in pan-draft recon

Waschinapushed 1 commit to batch_alignment_tests • cebc2de…8e203ac • 
on Aug 20

Bug fix (reaction names containing quotes)

Waschinapushed 1 commit to batch_alignment_tests • a7d3f21…cebc2de • 
on Aug 19

typo correction in usage instructions 'doall'

Waschinapushed 1 commit to batch_alignment_tests • 59df1e6…a7d3f21 • 
on Aug 14

Merge pull request #217 from cmkobel/master

Pull request merge
jotechpushed 8 commits to master • 9d4ff30…846f5be • 
on Aug 5

added myb71 nucleotide fasta again

jotechpushed 1 commit to master • 95c8e31…9d4ff30 • 
on Jul 22

Update biochem-DB (HMO degradation)

Waschinapushed 1 commit to batch_alignment_tests • 265f6ce…59df1e6 • 
on Jun 30

Update bile acid pathways

Waschinapushed 1 commit to batch_alignment_tests • 16dd870…265f6ce • 
on Jun 5

Update Biochem-DB - Enabled dissimiliatory sulfite reduction

Waschinapushed 1 commit to batch_alignment_tests • ac87dd2…16dd870 • 
on Jun 2

updated gapseq test to check for cobrar version

jotechpushed 2 commits to batch_alignment_tests • 31dfe42…ac87dd2 • 
on May 24

Clean up and bug fix

Waschinapushed 1 commit to batch_alignment_tests • a24c7f9…31dfe42 • 
on May 23

Bug fix

Waschinapushed 1 commit to batch_alignment_tests • acc8c02…a24c7f9 • 
on May 23

correct error with writing output files and quick test

jotechpushed 1 commit to batch_alignment_tests • 87cabee…acc8c02 • 
on May 19