Inputs: Update all inputs

* Every flake input that is used was updated (#33)
* Internal configuration handling of breaking changes

Author: jordanisaacs

Diff for: docs/release-notes/rl-0.1.adoc

@@ -51,6 +51,8 @@ vim.luaConfigRC = lib.nvim.dag.entryAnywhere "config here"
 
 * Add support for extending configurations. See docs for more details.
 
+* Removed the deprecated `openOnStartup` option from nvim-tree-lua
+
 https://github.com/MoritzBoehme[MoritzBoehme]:
 
 * `catppuccin` theme is now available as a neovim theme <<opt-vim.theme.style>> and lualine theme <<opt-vim.statusline.lualine.theme>>.