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outfile.txt
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----------------UTI----------------
Random forest classification before feature selection - 10 fold (accuracy scores):
[0.86956522 0.69565217 0.86956522 0.86956522 0.7826087 0.86363636
0.95454545 0.95454545 0.77272727 0.86363636]
Average accuracy score:
0.8496047430830039
Accuracy score standard deviation:
0.08007923130161386
AUC score:
[0.79166667 0.70833333 0.85 0.92083333 0.8 0.93333333
0.99047619 0.95238095 0.83333333 0.89047619]
average AUC score:
0.8670833333333334
AUC score standard deviation:
0.08637588672924895
R2 score
0.10445421168807867
Top 10 most important features:
('Aerococcusurinae', 0.02732494961064375)
('Enterococcusfaecalis', 0.04036408523117535)
('Escherichiacoli', 0.3355309582798127)
('Klebsiellapneumoniae', 0.06208194664230593)
('Lactobacillusgasseri', 0.030142478840312136)
('Lactobacillusiners', 0.026319812302648248)
('Lactobacillusjensenii', 0.031698061492038944)
('Staphylococcusaureus', 0.02803726362510125)
('Streptococcusagalactiae', 0.03649194850582629)
('Streptococcusanginosus', 0.07130525285341027)
----------------OAB----------------
Random forest classification before feature selection - 10 fold (accuracy scores):
[0.71428571 0.76190476 0.9047619 0.71428571 0.61904762 0.85714286
0.71428571 0.76190476 0.76190476 0.85 ]
Average accuracy score:
0.7659523809523809
Accuracy score standard deviation:
0.08451579811499958
AUC score:
[0.71111111 0.42777778 0.86666667 0.66666667 0.59444444 0.97777778
0.39444444 0.68888889 0.51666667 0.83333333]
average AUC score:
0.6677777777777778
AUC score standard deviation:
0.19029613771024062
R2 score
0.11847914377350166
Top 10 most important features:
('Aerococcusurinae', 0.04200954599510876)
('Enterococcusfaecalis', 0.05232998154681498)
('Escherichiacoli', 0.04431534363706104)
('Gardnerellavaginalis', 0.06374161184451721)
('Lactobacilluscrispatus', 0.03740576614494063)
('Lactobacillusgasseri', 0.09872346512932244)
('Lactobacillusiners', 0.03887335648438431)
('Staphylococcusepidermidis', 0.03759125862511759)
('Streptococcusagalactiae', 0.038590996016733804)
('Streptococcusanginosus', 0.06577719657091062)
----------------UUI----------------
Random forest classification before feature selection - 10 fold (accuracy scores):
[0.75 0.8 0.7 0.65 0.6 0.75 0.75 0.85 0.7 0.65]
Average accuracy score:
0.72
Accuracy score standard deviation:
0.0752772652709081
AUC score:
[0.32 0.67333333 0.70666667 0.61333333 0.66 0.51333333
0.67333333 0.81333333 0.64666667 0.34666667]
average AUC score:
0.5966666666666667
AUC score standard deviation:
0.15761337287375704
R2 score
-0.13139002196207006
Top 10 most important features:
('Corynebacteriumcoyleae', 0.04357535595702679)
('Corynebacteriumlipophilegroup', 0.03604587556790252)
('Escherichiacoli', 0.04918497578686265)
('Gardnerellavaginalis', 0.05574647109248094)
('Lactobacilluscrispatus', 0.08868040376941021)
('Lactobacillusiners', 0.049775801347096596)
('Lactobacillusjensenii', 0.06158940981282701)
('Staphylococcusepidermidis', 0.04467706806896154)
('Streptococcusanginosus', 0.08331097343881985)
('Unknown', 0.048520756569882945)
----------------SUI----------------
Random forest classification before feature selection - 10 fold (accuracy scores):
[0.7 0.7 0.8 0.6 0.65 0.9 0.7 0.85 0.8 0.75]
Average accuracy score:
0.745
Accuracy score standard deviation:
0.09264628073124866
AUC score:
[0.86666667 0.52 0.81333333 0.64666667 0.69333333 0.84666667
0.57333333 0.94666667 0.61333333 0.69333333]
average AUC score:
0.7213333333333333
AUC score standard deviation:
0.14036284549360534
R2 score
0.08326147258466132
Top 10 most important features:
('Aerococcusurinae', 0.046711215609092235)
('Corynebacteriumcoyleae', 0.030892653842054155)
('Escherichiacoli', 0.03912693687853835)
('Gardnerellavaginalis', 0.0939948231687673)
('Lactobacillusgasseri', 0.047027730802441756)
('Lactobacillusiners', 0.04404034498835098)
('Lactobacillusjensenii', 0.09033074428361076)
('Staphylococcusaureus', 0.036984228240714366)
('Staphylococcusepidermidis', 0.06780334004956941)
('Streptococcusanginosus', 0.05882298083820411)
----------------UTI----------------
Elastic net results:
R^2 score:
0.2124543499535262
----------------OAB----------------
Elastic net results:
R^2 score:
-15.748489048844622
----------------UUI----------------
Elastic net results:
R^2 score:
-5.967836043956887
----------------SUI----------------
Elastic net results:
R^2 score:
-43.145269003127616
----------------UTI----------------
KNN accuracy after features selection (10 fold):
[0.82608696 0.73913043 0.86956522 0.86956522 0.7826087 0.86363636
0.90909091 0.95454545 0.86363636 0.77272727]
average accuracy score:
0.8450592885375494
Accuracy score standard deviation:
0.06556712761835204
KNN AUC:
[0.825 0.74583333 0.875 0.9375 0.6125 0.81904762
0.85714286 0.92857143 0.85238095 0.80952381]
Average AUC score:
0.8262500000000002
AUC score standard deviation:
0.09389657434094964
r2 scores (10 fold):
[ 0.23333333 -0.15 0.425 0.425 0.04166667 0.37142857
0.58095238 0.79047619 0.37142857 -0.04761905]
average r2 score:
0.30416666666666664
R^2 score standard deviation:
0.2896935473011897
----------------OAB----------------
KNN accuracy after features selection (10 fold):
[0.66666667 0.66666667 0.85714286 0.76190476 0.76190476 0.76190476
0.71428571 0.71428571 0.80952381 0.9 ]
average accuracy score:
0.7614285714285715
Accuracy score standard deviation:
0.07679817174694636
KNN AUC:
[0.67222222 0.58888889 0.86666667 0.5 0.76111111 0.8
0.55 0.6 0.67222222 0.81333333]
Average AUC score:
0.6824444444444444
AUC score standard deviation:
0.12367686557391931
r2 scores (10 fold):
[-0.63333333 -0.63333333 0.3 -0.16666667 -0.16666667 -0.16666667
-0.4 -0.4 0.06666667 0.46666667]
average r2 score:
-0.17333333333333334
R^2 score standard deviation:
0.36777609935837224
----------------UUI----------------
KNN accuracy after features selection (10 fold):
[0.75 0.75 0.8 0.75 0.8 0.75 0.75 0.8 0.8 0.65]
average accuracy score:
0.76
Accuracy score standard deviation:
0.04594682917363409
KNN AUC:
[0.60666667 0.66666667 0.98 0.59333333 0.63333333 0.6
0.66 0.76666667 0.69333333 0.24 ]
Average AUC score:
0.644
AUC score standard deviation:
0.18268775222990405
r2 scores (10 fold):
[-0.33333333 -0.33333333 -0.06666667 -0.33333333 -0.06666667 -0.33333333
-0.33333333 -0.06666667 -0.06666667 -0.86666667]
average r2 score:
-0.27999999999999997
R^2 score standard deviation:
0.24504975559271505
----------------SUI----------------
KNN accuracy after features selection (10 fold):
[0.7 0.8 0.75 0.7 0.7 0.8 0.8 0.8 0.75 0.75]
average accuracy score:
0.755
Accuracy score standard deviation:
0.0437797517885457
KNN AUC:
[0.71333333 0.51333333 0.58666667 0.52 0.73333333 0.70666667
0.76 0.74 0.73333333 0.66666667]
Average AUC score:
0.6673333333333333
AUC score standard deviation:
0.09319831503801951
r2 scores (10 fold):
[-0.6 -0.06666667 -0.33333333 -0.6 -0.6 -0.06666667
-0.06666667 -0.06666667 -0.33333333 -0.33333333]
average r2 score:
-0.30666666666666653
R^2 score standard deviation:
0.2334920095389102
----------------UTI----------------
SVC - 10 fold (accuracy scores):
[0.91304348 0.69565217 0.86956522 0.82608696 0.82608696 0.86363636
1. 0.95454545 0.86363636 0.81818182]
Average accuracy score:
0.8630434782608696
Accuracy score standard deviation:
0.08329127133987396
AUC scores (10 fold):
[0.825 0.675 0.775 0.73333333 0.86666667 0.99047619
1. 0.92380952 0.95238095 0.87142857]
average AUC score:
0.8613095238095239
AUC score standard deviation:
0.10959890742586953
r2 scores (10 fold):
[ 0.61666667 -0.34166667 0.425 0.23333333 0.23333333 0.37142857
1. 0.79047619 0.37142857 0.16190476]
average r2 score:
0.38619047619047614
R^2 score standard deviation:
0.3684925848431745
----------------OAB----------------
SVC - 10 fold (accuracy scores):
[0.71428571 0.71428571 0.71428571 0.71428571 0.71428571 0.71428571
0.71428571 0.71428571 0.71428571 0.75 ]
Average accuracy score:
0.7178571428571429
Accuracy score standard deviation:
0.011293848786315635
AUC scores (10 fold):
[0.8 0.57222222 0.91666667 0.61111111 0.60555556 0.84444444
0.43888889 0.48888889 0.52222222 0.82 ]
average AUC score:
0.662
AUC score standard deviation:
0.1684137240301424
r2 scores (10 fold):
[-0.4 -0.4 -0.4 -0.4 -0.4 -0.4
-0.4 -0.4 -0.4 -0.33333333]
average r2 score:
-0.39333333333333353
R^2 score standard deviation:
0.021081851067789262
----------------UUI----------------
SVC - 10 fold (accuracy scores):
[0.75 0.75 0.75 0.75 0.75 0.75 0.75 0.75 0.75 0.75]
Average accuracy score:
0.75
Accuracy score standard deviation:
0.0
AUC scores (10 fold):
[0.24 0.62666667 0.62666667 0.33333333 0.62 0.48
0.31333333 0.36 0.6 0.47333333]
average AUC score:
0.4673333333333334
AUC score standard deviation:
0.14785545160020727
r2 scores (10 fold):
[-0.33333333 -0.33333333 -0.33333333 -0.33333333 -0.33333333 -0.33333333
-0.33333333 -0.33333333 -0.33333333 -0.33333333]
average r2 score:
-0.3333333333333332
R^2 score standard deviation:
0.0
----------------SUI----------------
SVC - 10 fold (accuracy scores):
[0.75 0.75 0.75 0.75 0.75 0.75 0.75 0.75 0.75 0.8 ]
Average accuracy score:
0.755
Accuracy score standard deviation:
0.015811388300841913
AUC scores (10 fold):
[0.66666667 0.38666667 0.53333333 0.6 0.4 0.43333333
0.37333333 0.72 0.10666667 0.66666667]
average AUC score:
0.48866666666666675
AUC score standard deviation:
0.18613814065743597
r2 scores (10 fold):
[-0.33333333 -0.33333333 -0.33333333 -0.33333333 -0.33333333 -0.33333333
-0.33333333 -0.33333333 -0.33333333 -0.06666667]
average r2 score:
-0.30666666666666653
R^2 score standard deviation:
0.08432740427115676
----------------UTI----------------
Logistic Regression - 10 fold (accuracy scores):
[0.82608696 0.73913043 0.91304348 0.82608696 0.65217391 0.72727273
0.90909091 0.77272727 0.86363636 0.81818182]
Average accuracy score:
0.8047430830039526
Accuracy score standard deviation:
0.08285638428834041
AUC scores (10 fold):
[0.775 0.71666667 0.94166667 0.83333333 0.625 0.8952381
0.85714286 0.79047619 0.67619048 0.8047619 ]
average AUC score:
0.791547619047619
AUC standard deviation:
0.09800133238331002
r2 scores (10 fold):
[0.775 0.71666667 0.94166667 0.83333333 0.625 0.8952381
0.85714286 0.79047619 0.67619048 0.8047619 ]
average r2 score:
0.791547619047619
R^2 score standard deviation:
0.09800133238331002
----------------OAB----------------
Logistic Regression - 10 fold (accuracy scores):
[0.52380952 0.71428571 0.9047619 0.80952381 0.61904762 0.85714286
0.76190476 0.76190476 0.76190476 0.9 ]
Average accuracy score:
0.7614285714285715
Accuracy score standard deviation:
0.120267820727092
AUC scores (10 fold):
[0.41111111 0.45 0.77222222 0.65555556 0.51666667 0.77777778
0.53888889 0.53333333 0.67777778 0.92666667]
average AUC score:
0.626
AUC standard deviation:
0.16453801141877855
r2 scores (10 fold):
[0.41111111 0.45 0.77222222 0.65555556 0.51666667 0.77777778
0.53888889 0.53333333 0.67777778 0.92666667]
average r2 score:
0.626
R^2 score standard deviation:
0.16453801141877855
----------------UUI----------------
Logistic Regression - 10 fold (accuracy scores):
[0.7 0.75 0.75 0.85 0.7 0.75 0.75 0.75 0.7 0.75]
Average accuracy score:
0.745
Accuracy score standard deviation:
0.043779751788545665
AUC scores (10 fold):
[0.62666667 0.54666667 0.21333333 0.72 0.52666667 0.6
0.59333333 0.72 0.44 0.46 ]
average AUC score:
0.5446666666666667
AUC standard deviation:
0.149766897066041
r2 scores (10 fold):
[0.62666667 0.54666667 0.21333333 0.72 0.52666667 0.6
0.59333333 0.72 0.44 0.46 ]
average r2 score:
0.5446666666666667
R^2 score standard deviation:
0.149766897066041
----------------SUI----------------
Logistic Regression - 10 fold (accuracy scores):
[0.8 0.7 0.8 0.75 0.65 0.9 0.75 0.8 0.75 0.75]
Average accuracy score:
0.7649999999999999
Accuracy score standard deviation:
0.06687467549246294
AUC scores (10 fold):
[0.6 0.53333333 0.64 0.64 0.53333333 0.91333333
0.28 0.45333333 0.57333333 0.36 ]
average AUC score:
0.5526666666666668
AUC standard deviation:
0.17323216420760146
r2 scores (10 fold):
[0.6 0.53333333 0.64 0.64 0.53333333 0.91333333
0.28 0.45333333 0.57333333 0.36 ]
average r2 score:
0.5526666666666668
R^2 score standard deviation:
0.17323216420760146