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Error with bindingType in annotatePeakInBatch #13

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rbenel opened this issue May 12, 2021 · 2 comments
Open

Error with bindingType in annotatePeakInBatch #13

rbenel opened this issue May 12, 2021 · 2 comments

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@rbenel
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rbenel commented May 12, 2021

Hi,

I would like to select a specific bindingType when using the annotatePeakInBatch function but I receive this error.

Annotate peaks by annoPeaks, see ?annoPeaks for details. maxgap will be ignored. Error in (function (peaks, annoData, bindingType = c("nearestBiDirectionalPromoters", : length(intersect(seqlevelsStyle(peaks), seqlevelsStyle(annoData))) > .... is not TRUE
@rbenel
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rbenel commented May 12, 2021

As a result of the bindingType and bindingRegion being ignore, the distancetoFeature is not limited to genes in the area and can be as many as 3599488 bases away from the closest feature...

@jianhong
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Please check the seqlevels of your peaks and annoData.

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@jianhong @rbenel