Changed files and added a wrapper for Nextflow

Author: ycoles448

conf/local.conf

@@ -0,0 +1,26 @@
+#!/usr/bin/env bash
+
+# =========================== #
+# - Nextflow Wrapper Script - #
+# =========================== #
+#
+# Author - Yutathkarn Coles
+# Email  - [email protected]
+#
+# Wrapper script written in Bash that runs Nextflow with default parameters,
+# including loading profile-specific configs and parameters
+# 
+
+# Load a Nextflow profile, valid options are local and setonix
+PROFILE="local"
+
+case $PROFILE in
+	(local)
+		CONF="conf/local.conf"
+		PARAMS="conf/local.yaml"
+		;;
+	(setonix)
+		CONF="conf/setonix.yaml"
+		PARAMS="conf/setonix.yaml"
+		;;
+	esac