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test_datachain_merge.py
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import math
from typing import Optional
import pandas as pd
import pytest
from pydantic import BaseModel
from sqlalchemy import func
from datachain.lib.dc import C, DataChain, DatasetMergeError
from tests.utils import skip_if_not_sqlite
class User(BaseModel):
name: Optional[str] = None
age: Optional[int] = None
class Player(User):
weight: Optional[float] = None
height: Optional[int] = None
class Employee(BaseModel):
id: Optional[int] = None
person: User
class TeamMember(BaseModel):
player: Optional[str] = None
sport: Optional[str] = None
weight: Optional[float] = None
height: Optional[float] = None
employees = [
Employee(id=151, person=User(name="Alice", age=31)),
Employee(id=152, person=User(name="Bob", age=27)),
Employee(id=153, person=User(name="Charlie", age=54)),
Employee(id=154, person=User(name="David", age=29)),
]
team = [
TeamMember(player="Alice", sport="volleyball", weight=120.3, height=5.5),
TeamMember(player="Charlie", sport="football", weight=200.0, height=6.0),
TeamMember(player="David", sport="football", weight=158.7, height=5.7),
TeamMember(player="John", sport="basketball", weight=250.3, height=7.0),
]
def test_merge_objects(test_session):
ch1 = DataChain.from_values(emp=employees, session=test_session)
ch2 = DataChain.from_values(team=team, session=test_session)
ch = ch1.merge(ch2, "emp.person.name", "team.player")
i = 0
j = 0
for items in ch.order_by("emp.person.name", "team.player").collect():
assert len(items) == 2
empl, player = items
assert isinstance(empl, Employee)
assert empl == employees[i]
i += 1
assert isinstance(player, TeamMember)
if empl.person.name != "Bob":
assert player.player == team[j].player
assert player.sport == team[j].sport
assert math.isclose(player.weight, team[j].weight, rel_tol=1e-7)
assert math.isclose(player.height, team[j].height, rel_tol=1e-7)
j += 1
else:
assert player.player is None
assert player.sport is None
assert pd.isnull(player.weight)
assert pd.isnull(player.height)
assert i == len(employees)
assert j == len(team) - 1
@pytest.mark.parametrize("multiple_predicates", [True, False])
def test_merge_objects_full_join(test_session, multiple_predicates):
ch1 = DataChain.from_values(emp=employees, session=test_session)
ch2 = DataChain.from_values(team=team, session=test_session)
if multiple_predicates:
ch = ch1.merge(
ch2,
["emp.person.name", "emp.person.name"],
["team.player", "team.player"],
full=True,
)
else:
ch = ch1.merge(ch2, "emp.person.name", "team.player", full=True)
i = 0
for items in ch.order_by("emp.person.name", "team.player").collect():
assert len(items) == 2
empl, player = items
assert isinstance(empl, Employee)
assert isinstance(player, TeamMember)
if player.player == "John":
assert empl.person.name is None
assert empl.person.age is None
continue
if empl.person.name == "Bob":
assert player.player is None
assert player.sport is None
assert pd.isnull(player.weight)
assert pd.isnull(player.height)
continue
assert player.player == team[i].player
assert player.sport == team[i].sport
assert math.isclose(player.weight, team[i].weight, rel_tol=1e-7)
assert math.isclose(player.height, team[i].height, rel_tol=1e-7)
i += 1
assert i == len(employees) - 1 == len(team) - 1
def test_merge_similar_objects(test_session):
new_employees = [
Employee(id=152, person=User(name="Bob", age=27)),
Employee(id=201, person=User(name="Karl", age=18)),
Employee(id=154, person=User(name="David", age=29)),
]
ch1 = DataChain.from_values(emp=employees, session=test_session)
ch2 = DataChain.from_values(emp=new_employees, session=test_session)
rname = "qq"
ch = ch1.merge(ch2, "emp.person.name", rname=rname)
assert list(ch.signals_schema.values.keys()) == ["sys", "emp", rname + "emp"]
empl = list(ch.collect())
assert len(empl) == 4
assert len(empl[0]) == 2
ch_inner = ch1.merge(ch2, "emp.person.name", rname=rname, inner=True)
assert len(list(ch_inner.collect())) == 2
@skip_if_not_sqlite
def test_merge_similar_objects_in_memory():
# Skip if not on SQLite, as in_memory databases are only supported on SQLite
new_employees = [
Employee(id=152, person=User(name="Bob", age=27)),
Employee(id=201, person=User(name="Karl", age=18)),
Employee(id=154, person=User(name="David", age=29)),
]
ch1 = DataChain.from_values(emp=employees, in_memory=True)
# This should use the same session as above (in_memory=True automatically)
ch2 = DataChain.from_values(emp=new_employees)
assert ch1.session.catalog.in_memory is True
assert ch1.session.catalog.metastore.db.db_file == ":memory:"
assert ch1.session.catalog.warehouse.db.db_file == ":memory:"
assert ch2.session.catalog.in_memory is True
assert ch2.session.catalog.metastore.db.db_file == ":memory:"
assert ch2.session.catalog.warehouse.db.db_file == ":memory:"
rname = "qq"
ch = ch1.merge(ch2, "emp.person.name", rname=rname)
assert ch.session.catalog.in_memory is True
assert ch.session.catalog.metastore.db.db_file == ":memory:"
assert ch.session.catalog.warehouse.db.db_file == ":memory:"
assert list(ch.signals_schema.values.keys()) == ["sys", "emp", rname + "emp"]
empl = list(ch.collect())
assert len(empl) == 4
assert len(empl[0]) == 2
ch_inner = ch1.merge(ch2, "emp.person.name", rname=rname, inner=True)
assert len(list(ch_inner.collect())) == 2
def test_merge_values(test_session):
order_ids = [11, 22, 33, 44]
order_descr = ["water", "water", "paper", "water"]
delivery_ids = [11, 44]
delivery_time = [24.0, 16.5]
ch1 = DataChain.from_values(id=order_ids, descr=order_descr, session=test_session)
ch2 = DataChain.from_values(
id=delivery_ids, time=delivery_time, session=test_session
)
ch = ch1.merge(ch2, "id")
assert list(ch.signals_schema.values.keys()) == [
"sys",
"id",
"descr",
"right_id",
"time",
]
i = 0
j = 0
sorted_items_list = sorted(ch.collect(), key=lambda x: x[0])
for items in sorted_items_list:
assert len(items) == 4
id, name, _right_id, time = items
assert id == order_ids[i]
assert name == order_descr[i]
i += 1
if pd.notnull(time):
assert id == delivery_ids[j]
assert time == delivery_time[j]
j += 1
assert i == len(order_ids)
assert j == len(delivery_ids)
def test_merge_multi_conditions(test_session):
order_ids = [11, 22, 33, 44]
order_name = ["water", "water", "paper", "water"]
order_descr = ["still water", "still water", "white paper", "sparkling water"]
delivery_ids = [11, 44]
delivery_name = ["water", "unknown"]
delivery_time = [24.0, 16.5]
ch1 = DataChain.from_values(
id=order_ids, name=order_name, descr=order_descr, session=test_session
)
ch2 = DataChain.from_values(
id=delivery_ids, d_name=delivery_name, time=delivery_time, session=test_session
)
ch = ch1.merge(ch2, ("id", "name"), ("id", C("d_name")))
res = list(ch.collect())
assert len(res) == max(len(employees), len(team))
success_ids = set()
for items in res:
if items[3]:
success_ids.add(items[0])
assert success_ids == {11}
def test_merge_errors(test_session):
ch1 = DataChain.from_values(emp=employees, session=test_session)
ch2 = DataChain.from_values(team=team, session=test_session)
with pytest.raises(DatasetMergeError):
ch1.merge(ch2, "unknown")
with pytest.raises(DatasetMergeError):
ch1.merge(ch2, ["emp.person.name"], "unknown")
with pytest.raises(DatasetMergeError):
ch1.merge(ch2, ["emp.person.name"], ["unknown"])
with pytest.raises(DatasetMergeError):
ch1.merge(
ch2, ("emp.person.age", func.substr(["emp.person.name"], 2)), "unknown"
)
ch1.merge(ch2, ["emp.person.name"], ["team.sport"])
ch1.merge(ch2, ["emp.person.name"], ["team.sport"])
with pytest.raises(DatasetMergeError):
ch1.merge(ch2, ["emp.person.name"], ["team.player", "team.sport"])
with pytest.raises(DatasetMergeError):
ch1.merge(ch2, 33)
with pytest.raises(DatasetMergeError):
ch1.merge(ch2, "emp.person.name", True)
def test_merge_with_itself(test_session):
ch = DataChain.from_values(emp=employees, session=test_session)
merged = ch.merge(ch, "emp.id")
count = 0
for left, right in merged.order_by("emp.id").collect():
assert isinstance(left, Employee)
assert isinstance(right, Employee)
assert left == right == employees[count]
count += 1
assert count == len(employees)
def test_merge_with_itself_column(test_session):
ch = DataChain.from_values(emp=employees, session=test_session)
merged = ch.merge(ch, C("emp.id"))
count = 0
for left, right in merged.order_by("emp.id").collect():
assert isinstance(left, Employee)
assert isinstance(right, Employee)
assert left == right == employees[count]
count += 1
assert count == len(employees)
def test_merge_on_expression(test_session):
def _get_expr(dc):
c = dc.c("team.sport")
return func.substr(c, func.length(c) - 3)
dc = DataChain.from_values(team=team, session=test_session)
right_dc = dc.clone()
# cross join on "ball" from sport
merged = dc.merge(right_dc, on=_get_expr(dc), right_on=_get_expr(right_dc))
cross_team = [
(left_member, right_member) for left_member in team for right_member in team
]
merged.show()
count = 0
for left, right_dc in merged.order_by("team.player", "right_team.player").collect():
assert isinstance(left, TeamMember)
assert isinstance(right_dc, TeamMember)
left_member, right_member = cross_team[count]
assert left == left_member
assert right_dc == right_member
count += 1
assert count == len(team) * len(team)