Crash while compiling in Conda environment #715
Description
Hi, I have been trying to install HDK for usage with a local modin fork. As such I have been following the steps in the ReadMe for conda environments. During which I have experienced the same crash multiple times. Does anyone have a pointer what I am doing wrong? Possibly I am missing some requirments, but I haven't been able to find the exact specifications needed, additionally I do not need GPU support. I would be happpy about any help or pointers.
After executing cmake -j, at 80% the execution gives an warning and crashes eventually.
The warning: hdk-main/omniscidb/QueryEngine/GpuSharedMemoryUtils.cpp: In memeber function 'void GpuSharedMemCodeBuilder::codegenInitialization():' hdk-main/omniscidb/QueryEngine/GpuSharedMemoryUtils.cpp:274:17 waring unsused variable 'target_info [-Wunused-variable] 274 ¦ const auto& target_info = targets_[target_logical_idx]
cmake .. output:
-- The C compiler identification is GNU 12.3.0
-- The CXX compiler identification is GNU 12.3.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /home/yves/miniconda3/envs/omnisci-dev/bin/x86_64-conda-linux-gnu-cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /home/yves/miniconda3/envs/omnisci-dev/bin/x86_64-conda-linux-gnu-c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Setting build type to 'RelWithDebInfo' as none was specified.
-- Boost 1.78.0 found.
-- Found folly: /home/yves/miniconda3/envs/omnisci-dev
-- Found SQLite3: /home/yves/miniconda3/envs/omnisci-dev/include (found version "3.40.0")
-- Found Arrow: /home/yves/miniconda3/envs/omnisci-dev/lib/libarrow.so
-- Found Parquet: /home/yves/miniconda3/envs/omnisci-dev/lib/libparquet.so
-- Boost 1.78.0 found.
-- Found ZLIB: /home/yves/miniconda3/envs/omnisci-dev/lib/libz.so (found version "1.2.13")
-- Found zstd: /home/yves/miniconda3/envs/omnisci-dev/lib/libzstd.so
-- Found LibXml2: /home/yves/miniconda3/envs/omnisci-dev/lib/libxml2.so (found version "2.12.4")
-- Found LLVM 16.0.6
-- Using LLVMConfig.cmake in: /home/yves/miniconda3/envs/omnisci-dev/lib/cmake/llvm
-- Found Threads: TRUE
-- Found JNI: /home/yves/miniconda3/envs/omnisci-dev/lib/jvm/include found components: AWT JVM
-- llvm_as_cmd=/home/yves/miniconda3/envs/omnisci-dev/bin/llvm-as
-- llvm_clangpp_cmd=/home/yves/miniconda3/envs/omnisci-dev/bin/clang++
-- llvm_link_cmd=/home/yves/miniconda3/envs/omnisci-dev/bin/llvm-link
-- Adding precompiled llvm module l0_mapd_rtL0_internal.bc
-- Adding precompiled llvm module DateAddL0_internal.bc
-- Adding precompiled llvm module DateTruncateL0_internal.bc
-- Adding precompiled llvm module RuntimeFunctions_internal.bc
-- Adding precompiled llvm module DateAdd_internal.bc
-- Adding precompiled llvm module DateTruncate_internal.bc
-- Adding precompiled llvm module genxL0_internal.bc
-- Found PythonInterp: /home/yves/miniconda3/envs/omnisci-dev/bin/python (found version "3.9.18")
-- Found Python3: /home/yves/miniconda3/envs/omnisci-dev/bin/python3.9 (found version "3.9.18") found components: Interpreter
-- Failed to find LLVM FileCheck
-- Found Git: /usr/bin/git (found version "2.34.1")
-- git version: v0.0.0 normalized to 0.0.0
-- Version: 1.8.0
-- Looking for shm_open in rt
-- Looking for shm_open in rt - found
-- Performing Test HAVE_CXX_FLAG_WALL
-- Performing Test HAVE_CXX_FLAG_WALL - Success
-- Performing Test HAVE_CXX_FLAG_WEXTRA
-- Performing Test HAVE_CXX_FLAG_WEXTRA - Success
-- Performing Test HAVE_CXX_FLAG_WSHADOW
-- Performing Test HAVE_CXX_FLAG_WSHADOW - Success
-- Performing Test HAVE_CXX_FLAG_WFLOAT_EQUAL
-- Performing Test HAVE_CXX_FLAG_WFLOAT_EQUAL - Success
-- Performing Test HAVE_CXX_FLAG_WERROR
-- Performing Test HAVE_CXX_FLAG_WERROR - Success
-- Performing Test HAVE_CXX_FLAG_WSUGGEST_OVERRIDE
-- Performing Test HAVE_CXX_FLAG_WSUGGEST_OVERRIDE - Success
-- Performing Test HAVE_CXX_FLAG_PEDANTIC
-- Performing Test HAVE_CXX_FLAG_PEDANTIC - Success
-- Performing Test HAVE_CXX_FLAG_PEDANTIC_ERRORS
-- Performing Test HAVE_CXX_FLAG_PEDANTIC_ERRORS - Success
-- Performing Test HAVE_CXX_FLAG_WSHORTEN_64_TO_32
-- Performing Test HAVE_CXX_FLAG_WSHORTEN_64_TO_32 - Failed
-- Performing Test HAVE_CXX_FLAG_FSTRICT_ALIASING
-- Performing Test HAVE_CXX_FLAG_FSTRICT_ALIASING - Success
-- Performing Test HAVE_CXX_FLAG_WNO_DEPRECATED_DECLARATIONS
-- Performing Test HAVE_CXX_FLAG_WNO_DEPRECATED_DECLARATIONS - Success
-- Performing Test HAVE_CXX_FLAG_WNO_DEPRECATED
-- Performing Test HAVE_CXX_FLAG_WNO_DEPRECATED - Success
-- Performing Test HAVE_CXX_FLAG_WSTRICT_ALIASING
-- Performing Test HAVE_CXX_FLAG_WSTRICT_ALIASING - Success
-- Performing Test HAVE_CXX_FLAG_WD654
-- Performing Test HAVE_CXX_FLAG_WD654 - Failed
-- Performing Test HAVE_CXX_FLAG_WTHREAD_SAFETY
-- Performing Test HAVE_CXX_FLAG_WTHREAD_SAFETY - Failed
-- Performing Test HAVE_CXX_FLAG_COVERAGE
-- Performing Test HAVE_CXX_FLAG_COVERAGE - Success
-- Compiling and running to test HAVE_STD_REGEX
-- Performing Test HAVE_STD_REGEX -- success
-- Compiling and running to test HAVE_GNU_POSIX_REGEX
-- Performing Test HAVE_GNU_POSIX_REGEX -- failed to compile
-- Compiling and running to test HAVE_POSIX_REGEX
-- Performing Test HAVE_POSIX_REGEX -- success
-- Compiling and running to test HAVE_STEADY_CLOCK
-- Performing Test HAVE_STEADY_CLOCK -- success
-- Check if compiler accepts -pthread
-- Check if compiler accepts -pthread - yes
-- Compiling and running to test HAVE_PTHREAD_AFFINITY
-- Performing Test HAVE_PTHREAD_AFFINITY -- failed to compile
-- Configuring done (4.5s)
-- Generating done (0.5s)
-- Build files have been written to: /home/yves/Desktop/MasterThesis/HDK/hdk-main/build
cmake -j output:
[ 1%] Building CXX object omniscidb/Logger/CMakeFiles/Logger.dir/Logger.cpp.o
[ 1%] Generating DateTruncate_internal.bc
[ 1%] Generating DateAdd_internal.bc
[ 1%] Generating RuntimeFunctions_internal.bc
[ 1%] Building CXX object omniscidb/ThirdParty/googletest/CMakeFiles/gtest.dir/gmock-gtest-all.cc.o
[ 1%] Generating ExtensionFunctions.ast.raw
[ 1%] Generating ../../bin/calcite-1.0-SNAPSHOT-jar-with-dependencies.jar
[ 1%] Building CXX object omniscidb/ThirdParty/googlebenchmark/src/CMakeFiles/benchmark.dir/benchmark.cc.o
[ 1%] Building CXX object omniscidb/ThirdParty/googlebenchmark/src/CMakeFiles/benchmark.dir/benchmark_api_internal.cc.o
[ 1%] Building CXX object omniscidb/ThirdParty/googlebenchmark/src/CMakeFiles/benchmark.dir/benchmark_runner.cc.o
[ 1%] Building CXX object omniscidb/ThirdParty/googlebenchmark/src/CMakeFiles/benchmark.dir/benchmark_name.cc.o
[ 1%] Building CXX object omniscidb/ThirdParty/googlebenchmark/src/CMakeFiles/benchmark.dir/check.cc.o
[ 2%] Building CXX object omniscidb/ThirdParty/googlebenchmark/src/CMakeFiles/benchmark.dir/benchmark_register.cc.o
[ 3%] Building CXX object omniscidb/ThirdParty/googlebenchmark/src/CMakeFiles/benchmark.dir/colorprint.cc.o
[ 3%] Building CXX object omniscidb/ThirdParty/googlebenchmark/src/CMakeFiles/benchmark.dir/commandlineflags.cc.o
-- Boost 1.78.0 found.
-- Found folly: /home/yves/miniconda3/envs/omnisci-dev
[ 4%] Building CXX object omniscidb/ThirdParty/googlebenchmark/src/CMakeFiles/benchmark.dir/counter.cc.o
[ 4%] Building CXX object omniscidb/ThirdParty/googlebenchmark/src/CMakeFiles/benchmark.dir/complexity.cc.o
[ 4%] Building CXX object omniscidb/ThirdParty/googlebenchmark/src/CMakeFiles/benchmark.dir/csv_reporter.cc.o
[ 4%] Building CXX object omniscidb/ThirdParty/googlebenchmark/src/CMakeFiles/benchmark.dir/console_reporter.cc.o
[ 4%] Building CXX object omniscidb/ThirdParty/googlebenchmark/src/CMakeFiles/benchmark.dir/json_reporter.cc.o
-- Boost 1.78.0 found.
[ 5%] Building CXX object omniscidb/ThirdParty/googlebenchmark/src/CMakeFiles/benchmark.dir/perf_counters.cc.o
[ 5%] Building CXX object omniscidb/ThirdParty/googlebenchmark/src/CMakeFiles/benchmark.dir/reporter.cc.o
[ 5%] Building CXX object omniscidb/ThirdParty/googlebenchmark/src/CMakeFiles/benchmark.dir/statistics.cc.o
[ 5%] Building CXX object omniscidb/ThirdParty/googlebenchmark/src/CMakeFiles/benchmark.dir/string_util.cc.o
-- Found LLVM 16.0.6
-- Using LLVMConfig.cmake in: /home/yves/miniconda3/envs/omnisci-dev/lib/cmake/llvm
[ 6%] Building CXX object omniscidb/ThirdParty/googlebenchmark/src/CMakeFiles/benchmark.dir/sysinfo.cc.o
[ 6%] Building CXX object omniscidb/ThirdParty/googlebenchmark/src/CMakeFiles/benchmark.dir/timers.cc.o
-- llvm_as_cmd=/home/yves/miniconda3/envs/omnisci-dev/bin/llvm-as
-- llvm_clangpp_cmd=/home/yves/miniconda3/envs/omnisci-dev/bin/clang++
-- llvm_link_cmd=/home/yves/miniconda3/envs/omnisci-dev/bin/llvm-link
-- Adding precompiled llvm module l0_mapd_rtL0_internal.bc
-- Adding precompiled llvm module DateAddL0_internal.bc
-- Adding precompiled llvm module DateTruncateL0_internal.bc
-- Adding precompiled llvm module RuntimeFunctions_internal.bc
-- Adding precompiled llvm module DateAdd_internal.bc
-- Adding precompiled llvm module DateTruncate_internal.bc
-- Adding precompiled llvm module genxL0_internal.bc
-- Failed to find LLVM FileCheck
-- git version: v0.0.0 normalized to 0.0.0
-- Version: 1.8.0
-- Performing Test HAVE_STD_REGEX -- success
-- Performing Test HAVE_GNU_POSIX_REGEX -- failed to compile
-- Performing Test HAVE_POSIX_REGEX -- success
-- Performing Test HAVE_STEADY_CLOCK -- success
-- Performing Test HAVE_PTHREAD_AFFINITY -- failed to compile
-- Configuring done (1.6s)
[ 7%] Generating ExtensionFunctions.ast
-- Generating done (1.9s)
-- Build files have been written to: /home/yves/Desktop/MasterThesis/HDK/hdk-main/build
[ 7%] Built target rerun_cmake
[ 7%] Generating RuntimeFunctions.bc
[ 7%] Built target QueryEngineFunctionsTargets
[ 7%] Linking CXX shared library libbenchmark.so
[ 7%] Built target benchmark
[ 8%] Building CXX object omniscidb/ThirdParty/googlebenchmark/src/CMakeFiles/benchmark_main.dir/benchmark_main.cc.o
[ 8%] Linking CXX shared library libbenchmark_main.so
[ 8%] Built target benchmark_main
[ 8%] Linking CXX shared library libgtest.so
[ 8%] Built target gtest
[ 8%] Built target calcite_java_lib
[ 8%] Linking CXX shared library libLogger.so
[ 8%] Built target Logger
[ 8%] Building CXX object omniscidb/SqliteConnector/CMakeFiles/SqliteConnector.dir/SqliteConnector.cpp.o
[ 10%] Building CXX object omniscidb/ConfigBuilder/CMakeFiles/ConfigBuilder.dir/ConfigBuilder.cpp.o
[ 10%] Building CXX object omniscidb/OSDependent/Unix/CMakeFiles/OSDependent.dir/omnisci_glob.cpp.o
[ 11%] Building CXX object omniscidb/Tests/CMakeFiles/ParallelSortTest.dir/ParallelSortTest.cpp.o
[ 11%] Building CXX object omniscidb/Tests/CMakeFiles/QuantileCpuTest.dir/Quantile/QuantileCpuTest.cpp.o
[ 11%] Building CXX object omniscidb/L0Mgr/CMakeFiles/L0Mgr.dir/L0MgrNoL0.cpp.o
[ 11%] Building CXX object omniscidb/OSDependent/Unix/CMakeFiles/OSDependent.dir/omnisci_path.cpp.o
[ 12%] Building CXX object omniscidb/QueryEngine/CostModel/CMakeFiles/CostModel.dir/CostModel.cpp.o
[ 14%] Building CXX object omniscidb/L0Mgr/CMakeFiles/L0Mgr.dir/L0ExceptionNoL0.cpp.o
[ 14%] Building CXX object omniscidb/OSDependent/Unix/CMakeFiles/OSDependent.dir/omnisci_fs.cpp.o
[ 14%] Building CXX object omniscidb/OSDependent/Unix/CMakeFiles/OSDependent.dir/omnisci_hostname.cpp.o
[ 14%] Building CXX object omniscidb/QueryEngine/CostModel/CMakeFiles/CostModel.dir/DataSources/EmptyDataSource.cpp.o
[ 15%] Building CXX object omniscidb/QueryEngine/CostModel/CMakeFiles/CostModel.dir/DataSources/DataSource.cpp.o
[ 15%] Building CXX object omniscidb/QueryEngine/CostModel/CMakeFiles/CostModel.dir/ExtrapolationModels/LinearExtrapolation.cpp.o
[ 15%] Building CXX object omniscidb/QueryEngine/CostModel/CMakeFiles/CostModel.dir/Measurements.cpp.o
[ 15%] Building CXX object omniscidb/QueryEngine/CostModel/CMakeFiles/CostModel.dir/Dispatchers/DefaultExecutionPolicy.cpp.o
[ 15%] Building CXX object omniscidb/QueryEngine/CostModel/CMakeFiles/CostModel.dir/Dispatchers/RRExecutionPolicy.cpp.o
[ 16%] Building CXX object omniscidb/QueryEngine/CostModel/CMakeFiles/CostModel.dir/Dispatchers/ProportionBasedExecutionPolicy.cpp.o
[ 16%] Building CXX object omniscidb/QueryEngine/CostModel/CMakeFiles/CostModel.dir/IterativeCostModel.cpp.o
[ 16%] Building CXX object omniscidb/QueryEngine/CostModel/CMakeFiles/CostModel.dir/ExtrapolationModels/ExtrapolationModelProvider.cpp.o
[ 16%] Linking CXX shared library libL0Mgr.so
[ 16%] Built target L0Mgr
[ 16%] Linking CXX shared library ../libOSDependent.so
[ 16%] Built target OSDependent
[ 17%] Building CXX object omniscidb/Shared/CMakeFiles/Shared.dir/StringTransform.cpp.o
[ 17%] Building CXX object omniscidb/Shared/CMakeFiles/Shared.dir/DateTimeParser.cpp.o
[ 17%] Building CXX object omniscidb/Shared/CMakeFiles/Shared.dir/StackTrace.cpp.o
[ 18%] Building CXX object omniscidb/Shared/CMakeFiles/Shared.dir/misc.cpp.o
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[ 18%] Building CXX object omniscidb/Shared/CMakeFiles/Shared.dir/thread_count.cpp.o
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[ 19%] Building CXX object omniscidb/Shared/CMakeFiles/Shared.dir/file_path_util.cpp.o
[ 20%] Linking CXX shared library libSqliteConnector.so
[ 20%] Built target SqliteConnector
[ 21%] Linking CXX static library libCostModel.a
[ 21%] Built target CostModel
[ 21%] Building CXX object omniscidb/Tests/CMakeFiles/CostModelTest.dir/CostModel/CostModelTest.cpp.o
[ 21%] Linking CXX executable CostModelTest
[ 21%] Built target CostModelTest
[ 21%] Linking CXX shared library libConfigBuilder.so
[ 21%] Built target ConfigBuilder
[ 21%] Linking CXX executable ParallelSortTest
[ 21%] Built target ParallelSortTest
[ 21%] Linking CXX executable QuantileCpuTest
[ 21%] Built target QuantileCpuTest
[ 21%] Linking CXX shared library libShared.so
[ 21%] Built target Shared
[ 22%] Building CXX object omniscidb/IR/CMakeFiles/IR.dir/Expr.cpp.o
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[ 26%] Building CXX object omniscidb/QueryEngine/CMakeFiles/group_by_hash_test.dir/MurmurHash.cpp.o
[ 26%] Building CXX object omniscidb/QueryEngine/CMakeFiles/group_by_hash_test.dir/DynamicWatchdog.cpp.o
[ 26%] Building CXX object omniscidb/IR/CMakeFiles/IR.dir//QueryEngine/DateTruncate.cpp.o
[ 26%] Building CXX object omniscidb/CudaMgr/CMakeFiles/CudaMgr.dir/CudaMgrNoCuda.cpp.o
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[ 26%] Building CXX object omniscidb/QueryEngine/CMakeFiles/group_by_hash_test.dir/QuantileRuntime.cpp.o
[ 27%] Building CXX object omniscidb/QueryEngine/CMakeFiles/group_by_hash_test.dir/RuntimeFunctions.cpp.o
[ 28%] Linking CXX shared library libCudaMgr.so
[ 28%] Built target CudaMgr
[ 28%] Building CXX object omniscidb/UdfCompiler/CMakeFiles/UdfCompiler.dir/UdfCompiler.cpp.o
[ 28%] Linking CXX executable group_by_hash_test
[ 28%] Linking CXX shared library libSchemaMgr.so
[ 28%] Built target group_by_hash_test
[ 28%] Built target SchemaMgr
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[ 30%] Building CXX object omniscidb/Tests/CMakeFiles/DateTimeUtilsTest.dir/Shared/DateTimeUtilsTest.cpp.o
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[ 31%] Building CXX object omniscidb/DataMgr/CMakeFiles/DataMgr.dir/DataMgr.cpp.o
[ 32%] Building CXX object omniscidb/DataMgr/CMakeFiles/DataMgr.dir/DataMgrDataProvider.cpp.o
[ 32%] Building CXX object omniscidb/DataMgr/CMakeFiles/DataMgr.dir/StringNoneEncoder.cpp.o
[ 32%] Building CXX object omniscidb/DataMgr/CMakeFiles/DataMgr.dir/Encoder.cpp.o
[ 33%] Building CXX object omniscidb/DataMgr/CMakeFiles/DataMgr.dir/BufferMgr/GpuBufferMgr/GpuBufferMgr.cpp.o
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[ 33%] Building CXX object omniscidb/DataMgr/CMakeFiles/DataMgr.dir/BufferMgr/CpuBufferMgr/CpuBufferMgr.cpp.o
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