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It is possible to do the same thing without `conda` as long as your python/pip version is at least 3.8,
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but that will require locally building a wheel for `zeroc-ice` (which pip does automatically) - it is a
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but that will require either installing a prebuilt wheel for `zeroc-ice` (Glencoe Software provides them [here](https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases) or locally building a wheel for `zeroc-ice` (which pip does automatically) - the latter is a
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process that can be anything from "completely seamless and without issues" to "I need to install every
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dependency ever imagined". Try at your own risk.
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@@ -45,9 +43,11 @@ Creates a transfer packet for moving objects between OMERO server instances.
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The syntax for specifying objects is: `<object>:<id>` where `<object>` can be `Image`, `Project`, `Dataset`, `Plate` or `Screen`. `Project` is assumed if `<object>:` is omitted. A file path needs to be provided; a tar file with the contents of the packet will be created at the specified path.
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Currently, only MapAnnotations, Tags, FileAnnotations and CommentAnnotations are packaged into the transfer pack. All kinds of ROI (except Masks) should work.
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If you would like to specify multiple objects, you can use the `<object>:<id1>-<id2>` for packing every object between `id1` and `id2`, or `<object>:<id1>,<id2>,<id3>` to pack only objects with ids `id1`, `id2` and `id3`.
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Note that, if you are packing a `Plate` or `Screen`, default OMERO settings prevent you from downloading Plates and you will generate an empty pack file if you do so. If you want to generate a pack file from these entities, you will need to set `omero.policy.binary_access` appropriately.
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Currently, only MapAnnotations, Tags, FileAnnotations, LongAnnotations (i.e. ratings) and CommentAnnotations are packaged into the transfer pack. All kinds of ROI (except Masks) should work.
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Note that, if you are packing a `Plate` or `Screen`, default OMERO settings prevent you from downloading Plates and you will get errors if you do so. If you want to generate a pack file from these entities, you will need to set `omero.policy.binary_access` appropriately.
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`--zip` packs the object into a compressed zip file rather than a tarball.
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@@ -70,16 +70,16 @@ Default is `all` and will create the archive. With `none`, only the `transfer.xm
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file is created, in which case the last cli argument is the path where
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the `transfer.xml` file will be written.
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`--ignore_errors`gnores any download/export errors during the pack process,
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`--ignore_errors`ignores any download/export errors during the pack process,
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often the result of servers which do not allow Plate downloads (but will
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ignore any non-zero return code from `omero download` or `omero export`).
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Examples:
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```
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omero transfer pack Image:123 transfer_pack.tar
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omero transfer pack --zip Image:123 transfer_pack.zip
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omero transfer pack Dataset:1111 /home/user/new_folder/new_pack.tar
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omero transfer pack --zip Image:123-126 transfer_pack.zip
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omero transfer pack Dataset:1111,1115 /home/user/new_folder/new_pack.tar
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omero transfer pack 999 tarfile.tar # equivalent to Project:999
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omero transfer pack --plugin arc Project:999 path/to/my/arc/repo
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omero transfer pack --binaries none Dataset:1111 /home/user/new_folder/
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