parameters.ggo

#
# Copyright (C) 2005-2011 Hervé Rouault <rouault@lps.ens.fr>
# 
# This file is part of Genherite.
# 
# Genherite is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
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#
     
purpose  "Genetic algorithm"

     # Options


option "pop_size" t "Size of the population (lambda)"
            int typestr="int" required

option "rand_seed"  u  "Seeding mode of the rng"
            flag off

option "recept_satur"  e  "Mode of action of the receptors"
            flag off

option "anchor_signal" a "Presence of the anchor signal in the network"
            flag off

option "nb_genes" g "Number of genes in each network"
            int typestr="int" required

option "nb_generations" r "Number of generations"
            int typestr="int" required

option "nb_net" n "Number of networks"
            int typestr="int" required

option "multi_threading" m "Use of multi-threading"
            flag on
            
option "behavior" b "Behavior of the network :\n** 0 for a bistable\n\
** 1 for an oscillator\n\n** 2 for a multistable multicellular\n\
** 22 for a two-cells bistable network (varying interactions)\n\
** 3 for gates\n** 4 for multistable monocellular\n\
** 5 for oscillators and bistable"
            int typestr="int" required

option "lambda" l "model (1+lambda) vs (lambda+lambda)\n\
flag on for (lambda+lambda)"
            flag off

option "simulated_annealing" s   "Simulated annealing"
   flag off