Automated dependency upgrades (#938)

* update dependencies for ubuntu-latest/py3.10

* update dependencies for ubuntu-latest/py3.11

* update dependencies for ubuntu-latest/py3.9

---------

Co-authored-by: github-actions <[email protected]>

Author: tschaume

requirements/ubuntu-latest_py3.10.txt

@@ -13,17 +13,17 @@ ase==3.22.1
     #   aflow
     #   dscribe
     #   matminer (setup.py)
-astroid==3.1.0
+astroid==3.2.2
     # via pylint
 attrs==23.2.0
     # via
     #   jsonschema
     #   referencing
-babel==2.14.0
+babel==2.15.0
     # via sphinx
 beautifulsoup4==4.12.3
     # via aflow
-black==24.4.0
+black==24.4.2
     # via matminer (setup.py)
 certifi==2024.2.2
     # via requests
@@ -37,14 +37,14 @@ click==8.1.7
     # via black
 contourpy==1.2.1
     # via matplotlib
-coverage[toml]==6.5.0
+coverage[toml]==7.5.2
     # via
     #   coveralls
     #   matminer (setup.py)
     #   pytest-cov
-coveralls==3.3.1
+coveralls==4.0.1
     # via matminer (setup.py)
-cryptography==42.0.5
+cryptography==42.0.7
     # via
     #   globus-sdk
     #   pyjwt
@@ -56,7 +56,7 @@ dnspython==2.6.1
     # via pymongo
 docopt==0.6.2
     # via coveralls
-docutils==0.21.1
+docutils==0.21.2
     # via sphinx
 dscribe==2.1.0
     # via matminer (setup.py)
@@ -66,11 +66,11 @@ fair-research-login==0.3.1
     # via mdf-toolbox
 flake8==7.0.0
     # via matminer (setup.py)
-fonttools==4.51.0
+fonttools==4.52.1
     # via matplotlib
 future==1.0.0
     # via uncertainties
-globus-sdk==3.40.0
+globus-sdk==3.41.0
     # via
     #   fair-research-login
     #   mdf-forge
@@ -85,18 +85,18 @@ iniconfig==2.0.0
     # via pytest
 isort==5.13.2
     # via pylint
-jinja2==3.1.3
+jinja2==3.1.4
     # via
     #   aflow
     #   sphinx
 jmespath==1.0.1
     # via matminer (setup.py)
-joblib==1.4.0
+joblib==1.4.2
     # via
     #   dscribe
     #   pymatgen
     #   scikit-learn
-jsonschema==4.21.1
+jsonschema==4.22.0
     # via
     #   matminer (setup.py)
     #   mdf-toolbox
@@ -110,7 +110,7 @@ llvmlite==0.42.0
     # via numba
 markupsafe==2.1.5
     # via jinja2
-matplotlib==3.8.4
+matplotlib==3.9.0
     # via
     #   ase
     #   pymatgen
@@ -122,7 +122,7 @@ mdf-forge==0.8.0
     # via matminer (setup.py)
 mdf-toolbox==0.7.1
     # via mdf-forge
-monty==2024.4.17
+monty==2024.5.24
     # via
     #   matminer (setup.py)
     #   pymatgen
@@ -167,11 +167,11 @@ pathspec==0.12.1
     # via black
 pillow==10.3.0
     # via matplotlib
-platformdirs==4.2.0
+platformdirs==4.2.2
     # via
     #   black
     #   pylint
-plotly==5.21.0
+plotly==5.22.0
     # via pymatgen
 pluggy==1.5.0
     # via pytest
@@ -185,23 +185,23 @@ pycparser==2.22
     # via cffi
 pyflakes==3.2.0
     # via flake8
-pygments==2.17.2
+pygments==2.18.0
     # via sphinx
 pyjwt[crypto]==2.8.0
     # via globus-sdk
-pylint==3.1.0
+pylint==3.2.2
     # via matminer (setup.py)
-pymatgen==2024.4.13
+pymatgen==2024.5.1
     # via matminer (setup.py)
-pymongo==4.6.3
+pymongo==4.7.2
     # via matminer (setup.py)
 pyparsing==3.1.2
     # via
     #   httplib2
     #   matplotlib
 pypif==2.1.2
     # via citrination-client
-pytest==8.1.1
+pytest==8.2.1
     # via
     #   matminer (setup.py)
     #   pytest-cov
@@ -220,11 +220,11 @@ pyyaml==6.0.1
     # via
     #   citrination-client
     #   pybtex
-referencing==0.34.0
+referencing==0.35.1
     # via
     #   jsonschema
     #   jsonschema-specifications
-requests==2.31.0
+requests==2.32.2
     # via
     #   citrination-client
     #   coveralls
@@ -234,19 +234,19 @@ requests==2.31.0
     #   mdf-toolbox
     #   pymatgen
     #   sphinx
-rpds-py==0.18.0
+rpds-py==0.18.1
     # via
     #   jsonschema
     #   referencing
 ruamel-yaml==0.18.6
     # via pymatgen
 ruamel-yaml-clib==0.2.8
     # via ruamel-yaml
-scikit-learn==1.4.2
+scikit-learn==1.5.0
     # via
     #   dscribe
     #   matminer (setup.py)
-scipy==1.13.0
+scipy==1.13.1
     # via
     #   ase
     #   dscribe
@@ -264,7 +264,7 @@ snowballstemmer==2.2.0
     # via sphinx
 soupsieve==2.5
     # via beautifulsoup4
-sparse==0.15.1
+sparse==0.15.4
     # via dscribe
 spglib==2.4.0
     # via pymatgen
@@ -288,11 +288,11 @@ sympy==1.12
     #   pymatgen
 tabulate==0.9.0
     # via pymatgen
-tenacity==8.2.3
+tenacity==8.3.0
     # via plotly
 termcolor==2.4.0
     # via aflow
-threadpoolctl==3.4.0
+threadpoolctl==3.5.0
     # via scikit-learn
 tomli==2.0.1
     # via
@@ -301,20 +301,20 @@ tomli==2.0.1
     #   pylint
     #   pytest
     #   sphinx
-tomlkit==0.12.4
+tomlkit==0.12.5
     # via pylint
-tqdm==4.66.2
+tqdm==4.66.4
     # via
     #   matminer (setup.py)
     #   mdf-forge
     #   pymatgen
-typing-extensions==4.11.0
+typing-extensions==4.12.0
     # via
     #   astroid
     #   black
 tzdata==2024.1
     # via pandas
-ujson==5.9.0
+ujson==5.10.0
     # via matminer (setup.py)
 uncertainties==3.1.7
     # via pymatgen