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Don't need to install nextflow for docs
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FROM sphinxdoc/sphinx as builder
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RUN apt-get clean all && apt-get update && apt-get dist-upgrade -y && apt-get upgrade
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RUN apt-get install --reinstall ca-certificates
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RUN mkdir -p /usr/share/man/man1 /usr/share/man/man2
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RUN apt-get install -y --no-install-recommends openjdk-11-jre
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RUN apt-get install curl -y
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RUN curl -L https://github.com/nextflow-io/nextflow/releases/download/v21.10.6/nextflow-21.10.6-all -o nextflow
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RUN chmod +x nextflow
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RUN mv nextflow /usr/local/bin
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RUN touch /usr/local/bin/nextflow && chmod +x /usr/local/bin/nextflow
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COPY ./ ./
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RUN rm -rf docs/build

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