Merge pull request #3610 from wee-snufkin/scrna-case_monocle3-trajectories

Monocle3 trajectory analysis case study tutorial

Author: hexylena

CONTRIBUTORS.yaml

@@ -1351,7 +1351,7 @@ wee-snufkin:
     name: Julia Jakiela
     email: [email protected]
     joined: 2022-06
-
+    
 willdurand:
     name: William Durand
     joined: 2017-09
@@ -1434,6 +1434,14 @@ elixir-europe:
     funder: true
     #funding_statement: |
 
+
+epsrc-training-grant:
+    name: EPSRC Training Grant DTP 2020-2021 Open University
+    joined: 2022-09
+    funder: true
+    funding_statement: The research internship was supported through EPSRC Training Grant DTP 2020-2021 Open University
+
 elixir-goblet-ttt:
     name: ELIXIR Goblet Train the Trainers
     joined: 2022-09
+

faqs/galaxy/tutorial_mode.md

@@ -0,0 +1,48 @@
+
+# This is the bibliography file for your tutorial.
+#
+# To add bibliography (bibtex) entries here, follow these steps:
+#  1) Find the DOI for the article you want to cite
+#  2) Go to https://doi2bib.org and fill in the DOI
+#  3) Copy the resulting bibtex entry into this file
+#
+# To cite the example below, in your tutorial.md file
+# use {% cite Batut2018 %}
+#
+# If you want to cite an online resourse (website etc)
+# you can use the 'online' format (see below)
+#
+# You can remove the examples below
+
+@article{Trapnell2014,
+  doi = {10.1038/nbt.2859},
+  url = {https://doi.org/10.1038/nbt.2859},
+  year = {2014},
+  month = mar,
+  publisher = {Springer Science and Business Media {LLC}},
+  volume = {32},
+  number = {4},
+  pages = {381--386},
+  author = {Cole Trapnell and Davide Cacchiarelli and Jonna Grimsby and Prapti Pokharel and Shuqiang Li and Michael Morse and Niall J Lennon and Kenneth J Livak and Tarjei S Mikkelsen and John L Rinn},
+  title = {The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells},
+  journal = {Nature Biotechnology}
+}
+
+@article{Bacon2018,
+  doi = {10.3389/fimmu.2018.02523},
+  url = {https://doi.org/10.3389/fimmu.2018.02523},
+  year = {2018},
+  month = nov,
+  publisher = {Frontiers Media {SA}},
+  volume = {9},
+  author = {Wendi A. Bacon and Russell S. Hamilton and Ziyi Yu and Jens Kieckbusch and Delia Hawkes and Ada M. Krzak and Chris Abell and Francesco Colucci and D. Stephen Charnock-Jones},
+  title = {Single-Cell Analysis Identifies Thymic Maturation Delay in Growth-Restricted Neonatal Mice},
+  journal = {Frontiers in Immunology}
+}
+
+@online{monocle3,
+  author = {cole-trapnell-lab},
+  title = {monocle3},
+  url = {https://cole-trapnell-lab.github.io/monocle3/},
+  urldate = {2022-09-23}
+}