From 416e0d4b3924ee08a61fd7e80700f138a97e5480 Mon Sep 17 00:00:00 2001 From: Anna Syme Date: Wed, 9 Oct 2024 09:16:38 +1100 Subject: [PATCH] Update tutorial.md minor change - correct genus to family in solution --- .../tutorials/quality-contamination-control/tutorial.md | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/topics/sequence-analysis/tutorials/quality-contamination-control/tutorial.md b/topics/sequence-analysis/tutorials/quality-contamination-control/tutorial.md index 846d0bdb7cc3d4..1296744da839ed 100644 --- a/topics/sequence-analysis/tutorials/quality-contamination-control/tutorial.md +++ b/topics/sequence-analysis/tutorials/quality-contamination-control/tutorial.md @@ -487,7 +487,7 @@ __Bracken__ (Bayesian Reestimation of Abundance after Classification with Kraken > > > > > > 1. 119, as the number of lines - > > 2. Staphylococcus, with 99.04%! + > > 2. Staphylococcaceae, with 99.06%! > {: .solution} > {: .question} @@ -610,4 +610,4 @@ Additionally, it's important to document and **report the contamination findings In this tutorial, we inspected the quality of the bacterial isolate sequencing data and checked the expected species and potential contamination. Prepared short reads **can be used in downstream analysis**, like [Genome Assembly]({% link topics/assembly/tutorials/mrsa-illumina/tutorial.md %}). Even after the assembly, you can identify contamination using a tool like **CheckM** ({% cite Parks_2015 %}). **CheckM** {% icon tool %} can be used for screening the 'cleanness' of bacterial assemblies. -To learn more about data quality control, you can follow this tutorial: [Quality Control]({% link topics/sequence-analysis/tutorials/quality-control/tutorial.md %}). \ No newline at end of file +To learn more about data quality control, you can follow this tutorial: [Quality Control]({% link topics/sequence-analysis/tutorials/quality-control/tutorial.md %}).