From 14d8c64becbbad5ffde1e670d604a04bf27f2564 Mon Sep 17 00:00:00 2001 From: mbstadler Date: Mon, 6 Jan 2025 13:15:23 +0100 Subject: [PATCH] create .R/Makevars so R can find jpeglib.h --- .github/workflows/R-CMD-check.yaml | 7 ++++++- 1 file changed, 6 insertions(+), 1 deletion(-) diff --git a/.github/workflows/R-CMD-check.yaml b/.github/workflows/R-CMD-check.yaml index 846fb6c..e626e05 100644 --- a/.github/workflows/R-CMD-check.yaml +++ b/.github/workflows/R-CMD-check.yaml @@ -78,7 +78,12 @@ jobs: run: | brew install harfbuzz brew install fribidi - brew install jpeg + brew install jpeg fftw + mkdir -p /Users/runner/.R + touch /Users/runner/.R/Makevars + echo 'export CPPFLAGS="-I/opt/homebrew/opt/jpeg/include"' >> /Users/runner/.R/Makevars + echo 'export LDFLAGS="-L/opt/homebrew/opt/jpeg/lib"' >> /Users/runner/.R/Makevars + echo 'export PKG_CONFIG_PATH="/opt/homebrew/opt/jpeg/lib/pkgconfig"' >> /Users/runner/.R/Makevars Rscript -e 'BiocManager::install(c("GenomeInfoDbData"), type = "source")' Rscript -e 'BiocManager::install(c("GenomicFeatures"), type = "source")'