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bibliography.bib
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@article{musser1997introspective,
title={Introspective sorting and selection algorithms},
author={Musser, David R},
journal={Software Practice and Experience},
year={1997}
}
@article{karkkainen2007fast,
title={Fast BWT in small space by blockwise suffix sorting},
author={K{\"a}rkk{\"a}inen, Juha},
journal={Theoretical Computer Science},
volume={387},
number={3},
pages={249--257},
year={2007},
publisher={Elsevier}
}
@article{manber1993suffix,
title={Suffix arrays: a new method for on-line string searches},
author={Manber, Udi and Myers, Gene},
journal={SIAM Journal on Computing},
volume={22},
number={5},
pages={935--948},
year={1993},
publisher={SIAM}
}
@article{karkkainen2007fast,
title={Fast BWT in small space by blockwise suffix sorting},
author={K{\"a}rkk{\"a}inen, Juha},
journal={Theoretical Computer Science},
volume={387},
number={3},
pages={249--257},
year={2007},
publisher={Elsevier}
}
@incollection{vigna2008broadword,
title={Broadword implementation of rank/select queries},
author={Vigna, Sebastiano},
booktitle={Experimental Algorithms},
pages={154--168},
year={2008},
publisher={Springer}
}
@inproceedings{tischler2011wavelet,
title={On wavelet tree construction},
author={Tischler, German},
booktitle={Combinatorial Pattern Matching},
pages={208--218},
year={2011},
organization={Springer}
}
@inproceedings{claude2009practical,
title={Practical rank/select queries over arbitrary sequences},
author={Claude, Francisco and Navarro, Gonzalo},
booktitle={String Processing and Information Retrieval},
pages={176--187},
year={2009},
organization={Springer}
}
@inproceedings{claude2012wavelet,
title={The wavelet matrix},
author={Claude, Francisco and Navarro, Gonzalo},
booktitle={String Processing and Information Retrieval},
pages={167--179},
year={2012},
organization={Springer}
}
@article{finkel1987dib,
title={DIB—a distributed implementation of backtracking},
author={Finkel, Raphael and Manber, Udi},
journal={ACM Transactions on Programming Languages and Systems (TOPLAS)},
volume={9},
number={2},
pages={235--256},
year={1987},
publisher={ACM}
}
@inproceedings{karkkainen2011fixed,
title={Fixed block compression boosting in FM-indexes},
author={K{\"a}rkk{\"a}inen, Juha and Puglisi, Simon J},
booktitle={String Processing and Information Retrieval},
pages={174--184},
year={2011},
organization={Springer}
}
@article{rao1987parallel,
title={Parallel depth first search. Part I. implementation},
author={Rao, V Nageshwara and Kumar, Vipin},
journal={International Journal of Parallel Programming},
volume={16},
number={6},
pages={479--499},
year={1987},
publisher={Springer}
}
@article{kumar1987parallel,
title={Parallel depth first search. Part II. analysis},
author={Kumar, Vipin and Rao, V Nageshwara},
journal={International Journal of Parallel Programming},
volume={16},
number={6},
pages={501--519},
year={1987},
publisher={Springer}
}
@inproceedings{reinefeld1994work,
title={Work-load balancing in highly parallel depth-first search},
author={Reinefeld, Alexander and Schnecke, Volker},
booktitle={Scalable High-Performance Computing Conference, 1994., Proceedings of the},
pages={773--780},
year={1994},
organization={IEEE}
}
@inproceedings{belazzougui2014linear,
title={Linear time construction of compressed text indices in compact space},
author={Belazzougui, Djamal},
booktitle={Proceedings of the 46th Annual ACM Symposium on Theory of Computing},
pages={148--193},
year={2014},
organization={ACM}
}
@article{apostolico2000efficient,
title={Efficient detection of unusual words},
author={Apostolico, Alberto and Bock, Mary Ellen and Lonardi, Stefano and Xu, Xuyan},
journal={Journal of Computational Biology},
volume={7},
number={1-2},
pages={71--94},
year={2000},
publisher={Mary Ann Liebert, Inc.}
}
@article{apostolico2003monotony,
title={Monotony of surprise and large-scale quest for unusual words},
author={Apostolico, Alberto and Bock, Mary Ellen and Lonardi, Stefano},
journal={Journal of Computational Biology},
volume={10},
number={3-4},
pages={283--311},
year={2003},
publisher={Mary Ann Liebert, Inc.}
}
@inproceedings{sinha2000statistical,
title={A statistical method for finding transcription factor binding sites.},
author={Sinha, Saurabh and Tompa, Martin},
booktitle={ISMB},
volume={8},
pages={344--354},
year={2000}
}
@incollection{belazzougui2013versatile,
title={Versatile succinct representations of the bidirectional burrows-wheeler transform},
author={Belazzougui, Djamal and Cunial, Fabio and K{\"a}rkk{\"a}inen, Juha and M{\"a}kinen, Veli},
booktitle={Algorithms--ESA 2013},
pages={133--144},
year={2013},
publisher={Springer}
}