Added e-evol 4.2.2

Author: fredericlemoine

r-evol/v4.2.2/Dockerfile

@@ -0,0 +1,50 @@
+# R with packages:
+# - ape
+# - big.phylo
+# - ggplot2
+# - ggthemes
+# - plyr
+# - dplyr
+# - tidyr
+# - reshape2
+# - lubridate
+# - Phylogram
+# - Admixtools
+# https://cran.r-project.org/
+# v4.2.2
+
+# base image: r-base:4.1.0
+FROM r-base:4.2.2
+
+# File Author / Maintainer
+LABEL [email protected]
+
+ENV CRANREPO="'https://pbil.univ-lyon1.fr/CRAN/'"
+ENV RLIBPATH="'/usr/local/lib/R/site-library/'"
+
+RUN apt-get update && apt-get install -y procps libssl-dev            \
+              libcurl4-gnutls-dev curl git libopenmpi-dev             \
+	      openmpi-bin openmpi-doc libxml2-dev apt-transport-https \
+	      libfontconfig1-dev libtool file libharfbuzz-dev         \
+	      libfribidi-dev libfreetype6-dev libpng-dev libtiff5-dev \
+	      libjpeg-dev                                             \
+  && R -e "install.packages('devtools',lib=$RLIBPATH,repo=$CRANREPO)" \
+  && R -e "library(devtools); withr::with_libpaths(new = $RLIBPATH, install_github(\"uqrmaie1/admixtools\",INSTALL_opts=\"--no-staged-install\"))" \
+  && R -e "install.packages('ape',lib=$RLIBPATH,repo=$CRANREPO)"      \
+  && R -e "install.packages('treedater',lib=$RLIBPATH,repo=$CRANREPO)"\
+  && R -e "install.packages('phylogram',lib=$RLIBPATH,repo=$CRANREPO)"\
+  && R -e "install.packages('ggplot2',lib=$RLIBPATH,repo=$CRANREPO)"  \
+  && R -e "install.packages('ggthemes',lib=$RLIBPATH,repo=$CRANREPO)"  \
+  && R -e "install.packages('plyr',lib=$RLIBPATH,repo=$CRANREPO)"     \
+  && R -e "install.packages('reshape2',lib=$RLIBPATH,repo=$CRANREPO)" \
+  && R -e "install.packages('dplyr',lib=$RLIBPATH,repo=$CRANREPO)"    \
+  && R -e "install.packages('TreeDist',lib=$RLIBPATH,repo=$CRANREPO)" \
+  && R -e "install.packages('tidyr',lib=$RLIBPATH,repo=$CRANREPO)"    \
+  && R -e "install.packages('lubridate',lib=$RLIBPATH,repo=$CRANREPO)"\
+  && R -e "library(devtools); withr::with_libpaths(new = $RLIBPATH, install_github(\"olli0601/big.phylo\",INSTALL_opts=\"--no-staged-install\"))" \
+  && apt-get autoremove -y                                            \
+  && apt-get clean                                                    \
+  && rm -rf /var/lib/apt/lists/*                                      \
+  && mkdir /pasteur
+
+ENTRYPOINT ["/usr/bin/R"]