Sense/antisense representation is wrong for chem with multipal H-bonds #6466
Labels
Antisense
Bucket: Antisense related issues
Priority: Medium
Sequence mode
Bucket: Sequence mode related issues
Severity: Medium
Medium level visibility to the user
Milestone
Steps to Reproduce
CHEM1{[4aPEGMal]}|RNA1{R(A)P.R(A)P.R(A)}|RNA2{R(U)}$CHEM1,RNA1,1:pair-5:pair|CHEM1,RNA1,1:pair-2:pair|RNA2,RNA1,2:pair-8:pair|CHEM1,RNA2,1:R2-1:R1$$$V2.0
Actual behavior
![Image](https://private-user-images.githubusercontent.com/26869421/411633472-a51796b3-b708-4a71-9136-ed1ed3947d5f.png?jwt=eyJhbGciOiJIUzI1NiIsInR5cCI6IkpXVCJ9.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.i5UtxE7mNxPI4OVD3EZECv9BKR8VWV-GydYHm9AapdM)
Representation is wrong
Expected behavior
![Image](https://private-user-images.githubusercontent.com/26869421/411635339-763f336e-b953-419e-8a70-30450fe26577.png?jwt=eyJhbGciOiJIUzI1NiIsInR5cCI6IkpXVCJ9.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.fBoYGOhIUtAlGpL7uemmA0YaViOaBK6OM80GE_FgdHE)
Versions
Issue found while testing: #5942
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