System shows phosphate as CHEM in antisense chain #6438
Labels
Antisense
Bucket: Antisense related issues
Priority: Medium
Sequence mode
Bucket: Sequence mode related issues
Severity: Medium
Medium level visibility to the user
Milestone
Steps to Reproduce
RNA1{R(A)P}|RNA2{R(U)P}|RNA3{R(A)}|CHEM1{[4aPEGMal]}|RNA4{P}$RNA1,RNA2,2:pair-2:pair|RNA1,CHEM1,3:R2-1:R1|CHEM1,RNA3,1:R2-1:R1|RNA3,RNA4,2:pair-1:pair|RNA2,RNA4,3:R2-1:R1$$$V2.0
Actual behavior
![Image](https://private-user-images.githubusercontent.com/26869421/410661544-d1be18fa-66f7-470a-b549-60f6f7dce41b.png?jwt=eyJhbGciOiJIUzI1NiIsInR5cCI6IkpXVCJ9.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.74Ucle_EPZEK26vwglHmpR7Ne8BjigyoW4hoQsGmNis)
System shows phosphate as CHEM in antisense chain
Expected behavior
![Image](https://private-user-images.githubusercontent.com/26869421/410661860-00dfc66e-408f-4fb0-9a21-0ad00fc4ddbc.png?jwt=eyJhbGciOiJIUzI1NiIsInR5cCI6IkpXVCJ9.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.iZN0qQ2Euz833s-eQSd0x_0UiZd3d_J8lkxaV15XO_g)
System shows phosphate as it is
Versions
Issue found while testing: #5942
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