.env

# Load standard UniProt curation environment (required for subprocess calls)
BINPROT=path/to/binprot
SPROT=path/to/sprot
PERLLIB=path/to/perllib

# Set base path variables
FILE_DIR=tests/fixtures/files
REMOTE_DIR=/remote/server/path

# Directories for the different submission file types
LOG_DIR=${FILE_DIR}/logfiles
LOG_REMOTE_DIR=${REMOTE_DIR}/various

TREMBL_DIR=${FILE_DIR}/tremblfiles
TREMBL_REMOTE_DIR=${REMOTE_DIR}/tr_curated

NEW_DIR=${FILE_DIR}/newfiles
NEW_REMOTE_DIR=${REMOTE_DIR}/tr_curated

PEP_DIR=${FILE_DIR}/pepfiles
PEP_REMOTE_DIR=${REMOTE_DIR}/tr_curated

SUB_DIR=${FILE_DIR}/subfiles
SUB_REMOTE_DIR=${REMOTE_DIR}/tr_curated

PID_DIR=${FILE_DIR}/pidfiles
PID_REMOTE_DIR=${REMOTE_DIR}/pidupd

SEQ_DIR=${FILE_DIR}/seqfiles
SEQ_REMOTE_DIR=${REMOTE_DIR}/sequpd

# FTP authentication
REMOTE_HOST_NAME=Remote
REMOTE_USER=username
REMOTE_SERVER=server
REMOTE_KEY=path/to/key
KNOWN_HOSTS=path/to/known_hosts

# Server to retrieve TrEMBL entries (required for creation of pyvcr cassettes)
TREMBL_SERVER=https://www.uniprot.org