Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Travis CI build error in develop #6

Open
drisso opened this issue Apr 26, 2016 · 0 comments
Open

Travis CI build error in develop #6

drisso opened this issue Apr 26, 2016 · 0 comments

Comments

@drisso
Copy link
Owner

drisso commented Apr 26, 2016

 > getGeneLengthAndGCContent(id=c("ENSG00000012048", "ENSG00000139618"), org="hsa", mode = "biomart")
  Connecting to BioMart ...
  Space required after the Public Identifier
  SystemLiteral " or ' expected
  SYSTEM or PUBLIC, the URI is missing
  Error: 1: Space required after the Public Identifier
  2: SystemLiteral " or ' expected
  3: SYSTEM or PUBLIC, the URI is missing

The problem appears to be related to biomaRt, but it does work on my local machine (even with a bioc-devel docker image) and in the Bioc builds. It fails only on Travis CI.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant