http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=T094831_2.00 - CisBP_2022_02_24_4_13_pm - Homo Sapiens CTCF PWM motif matrices
Disambiguate motifs and sites
Scan p-value thresholded CTCF motifs for overlap with SCREEN ENCODE CREs
See if SCREEN ENCODE CREs can be annotated with directionality

Other transcription factors

CEBPB, CMYC, CTCF, JUND, MAFK, P300, POL2, POLR2A, RAD21, SMC3, TAF1, and TBP for hESCs, and CEBPB, CTCF, MAFK, POLR2A, and RAD21 - From Arboretum-Hi-C paper
In addition to CTCF, ZNF143, YY1, DNAse, H3K36me3, TSSs, RNA Pol II, SP1, ZNF274, SIX5. From Hong, Seungpyo, and Dongsup Kim. “Computational Characterization of Chromatin Domain Boundary-Associated Genomic Elements.” Nucleic Acids Research 45, no. 18 (October 13, 2017): 10403–14. https://doi.org/10.1093/nar/gkx738.
four members of the cohesin complex (STAG2, SMC3, SMC1A, and RAD21) - from M. Ryan Corces and Victor G. Corces, “The Three-Dimensional Cancer Genome,” Current Opinion in Genetics & Development 36 (2016)

Motif matrices

CTCF-MP, https://github.com/ma-compbio/CTCF-MP/tree/master/Data/gm12878 - single cell-type-specific BED file used for predicting Gm12878 loops
mESC CTCF, https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE36027 - many cell type-specific broadPeak files
mESC epigenomic marks, https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE31039
RenLab Hi-C and CTCF data http://chromosome.sdsc.edu/mouse/download.html - cell/tissue-specific data, from Shen Y, Yue F, McCleary DF, Ye Z et al. A map of the cis-regulatory sequences in the mouse genome. Nature 2012 Aug 2;488(7409):116-20. PMID: 22763441
Find all available CTCF datasets at http://cistrome.org/db/#/. Need to select relevant tissue-specific marks.