run_fig2a_proper.sh

#!/bin/bash
## RENAME FOR YOUR JOB
#PBS -N MACKE_fig2a

## EDIT FOR YOUR JOB
## For 8 core nodes
#PBS -l nodes=1:ppn=8,feature=8core

## WALLTIME DEFAULTS TO ONE HOUR - ALWAYS SPECIFY FOR LONGER JOBS
## If the job doesn't finish in 10 minutes, cancel it
#PBS -l walltime=00:33:00

## EDIT FOR YOUR JOB
## Put the STDOUT and STDERR from jobs into the below directory
#PBS -o /gscratch/riekesheabrown/dleen/cpp/LIF_MACKE/joblogs
## Put both the stderr and stdout into a single file
#PBS -j oe

#PBS -m abe -M dleen@u.washington.edu

## EDIT FOR YOUR JOB
## Sepcify the working directory for this job bundle
#PBS -d /gscratch/riekesheabrown/dleen/cpp/LIF_MACKE/data

#PBS -q bf

HYAK_SLOTS=`wc -l < $PBS_NODEFILE`

##LOOP_NUMBER=0

## jobargs is a file with the arguments you want to pass to your application
##  
(echo fig2a 0.05 LIF $LOOP_NUMBER;
 echo fig2a 0.1 LIF $LOOP_NUMBER;
 echo fig2a 0.25 LIF $LOOP_NUMBER;
 echo fig2a 0.05 EIF $LOOP_NUMBER;
 echo fig2a 0.1 EIF $LOOP_NUMBER;
 echo fig2a 0.25 EIF $LOOP_NUMBER;
 echo fig2a 0.05 QIF $LOOP_NUMBER;
 echo fig2a 0.1 QIF $LOOP_NUMBER) | parallel --colsep ' ' -j $HYAK_SLOTS /gscratch/riekesheabrown/dleen/cpp/LIF_MACKE/spike_macke_figures.out {}