A workflow for 3D serial section registration and analysis
Under active development
Although not always neccessary, we recommend installing into a fresh environment when possible to avoid installation issues.
conda create -n mushroom -c conda-forge -y python=3.11 jupyter
conda activate mushroom
pip install git+https://github.com/ding-lab/mushroom.gitAPI subject to change...
Registering multi-modal serial section data
Location of materials for 3D Imaging and Multimodal Spatial Characterization of the Precancer-to-Cancer Transition in Breast and Prostate
H&E protein prediction model training
Serial section registration workflow
3D ROI data generation and quantification