MAINT: Fix linting errors

Also updated ruffs rules.

Author: derb12

.github/workflows/python-test.yml

@@ -110,4 +110,4 @@ jobs:
       run: python -m pip install ruff
 
     - name: Lint
-      run: ruff check . --show-source
+      run: ruff check .

pybaselines/classification.py

@@ -805,7 +805,6 @@ def fabc(self, data, lam=1e6, scale=None, num_std=3.0, diff_order=2, min_length=
 
         return baseline, params
 
-
     @_Algorithm._register(sort_keys=('mask',))
     def rubberband(self, data, segments=1, lam=None, diff_order=2, weights=None,
                    smooth_half_window=None, **pad_kwargs):

pyproject.toml

@@ -98,6 +98,7 @@ known_local_folder = ["example_helpers"]
 exclude = ["docs/*"]
 line-length = 100
 fix = false
+output-format = "full"
 
 [tool.ruff.lint]
 preview = true  # for using experimental rules

requirements/requirements-development.txt

@@ -2,7 +2,7 @@
 -r requirements-documentation.txt
 
 # for linting
-ruff==0.2.1
+ruff==0.2.2
 
 # for testing
 pytest==8.0.0

tests/test_algorithm_setup.py

@@ -626,7 +626,6 @@ def func2(self, data, *args, **kwargs):
             }
             return 1 * data, params
 
-
     if change_order:
         x[sort_indices] = x[sort_indices][::-1]
         y[sort_indices] = y[sort_indices][::-1]

tests/test_banded_utils.py

@@ -107,7 +107,6 @@ def test_diff_penalty_diagonals_datasize_too_small():
         _banded_utils.diff_penalty_diagonals(-1)
 
 
-
 @pytest.mark.parametrize('data_size', (10, 51))
 @pytest.mark.parametrize('diff_order', (1, 2, 3, 4))
 def test_diff_penalty_matrix(data_size, diff_order):
@@ -452,7 +451,6 @@ def check_penalized_system(penalized_system, expected_penalty, lam, diff_order,
         )
 
 
-
 @pytest.mark.parametrize('diff_order', (1, 2, 3))
 @pytest.mark.parametrize('allow_lower', (True, False))
 @pytest.mark.parametrize('reverse_diags', (None, True, False))

tests/test_meta.py

@@ -409,7 +409,6 @@ def test_setup(self):
         assert self.param_keys == []
         assert self.two_d
 
-
     def test_reverse_array(self):
         """Ensures the reverse_array funcion works correctly."""
         assert_allclose(self.reverse_array(self.y), self.y[..., ::-1])

tests/test_utils.py

@@ -40,6 +40,7 @@ def test_gaussian(_x_data, height, center, sigma):
         gaussian(_x_data, height, center, sigma), 1e-12, 1e-12
     )
 
+
 @pytest.mark.parametrize('sigma', (0, -1))
 def test_gaussian_non_positive_sigma(_x_data, sigma):
     """Ensures a sigma value not greater than 0 raises an exception."""

tests/test_validation.py

@@ -38,6 +38,7 @@ def test_yx_arrays_no_x(small_data):
     assert isinstance(y, np.ndarray)
     assert_allclose(y, small_data, rtol=1e-12, atol=1e-12)
 
+
 @pytest.mark.parametrize('array_enum', (0, 1))
 def test_yxz_arrays_output_array(data_fixture2d, array_enum):
     """Ensures output y, x, and z are always numpy arrays and that x and z are not scaled."""
@@ -343,6 +344,7 @@ def test_check_half_window_failures():
     with pytest.raises(TypeError):
         _validation._check_half_window(5.01)
 
+
 @pytest.mark.parametrize(
     'half_window', (
         5, 5.0, [5], (5,), [[5]], np.array(5), np.array([5]), np.array([[5]]),

tests/two_d/test_spline.py

@@ -189,7 +189,6 @@ def test_diff_order_one_fails(self):
         with pytest.raises(ValueError):
             self.class_func(self.y, diff_order=[2, 1])
 
-
     @pytest.mark.parametrize('lam', (1e1, 1e5, [1e1, 1e5]))
     @pytest.mark.parametrize('lam_1', (1e1, [1e1, 1e5]))
     @pytest.mark.parametrize('p', (0.01, 0.1))