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Copy file name to clipboardExpand all lines: README.md
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A comprehensive example of pyGenomeTracks can be found as part of our automatic testing.
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Note, that pyGenome tracks also allows the combination of multiple tracks into one using the parameter: `overlay previous=yes` or `overlay previous=share-y`.
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Note, that pyGenome tracks also allows the combination of multiple tracks into one using the parameter: `overlay_previous=yes` or `overlay_previous=share-y`.
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In the second option the y-axis of the tracks that overlays is the same as the track being overlay. Multiple tracks can be overlay together.
In these examples is where the overlay tracks are more useful. Notice that any track can be overlay over a Hi-C matrix. Most useful is to overlay TADs or to overlay links using the `triangles` option
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that will point in the Hi-C matrix the pixel with the link contact. When overlaying links and TADs is useful to set `overlay previous=share-y` such that the two tracks match the positions. This is not
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that will point in the Hi-C matrix the pixel with the link contact. When overlaying links and TADs is useful to set `overlay_previous=share-y` such that the two tracks match the positions. This is not
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required when overlying other type of data like a bigwig file that has a different y-scale.
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