bug corrected

Author: lldelisle

examples/bedgraph_matrix_lines.ini

@@ -0,0 +1,11 @@
+[bedgraph matrix]
+file = tad_separation_score.bm.gz
+file_type = bedgraph_matrix
+type = lines
+title = bedgraph matrix
+height = 5
+
+[spacer]
+
+[x-axis]
+

examples/generateAllOutput.sh

@@ -1,10 +1,10 @@
-pgt --tracks ./examples/bigwig_track.ini --region X:2,500,000-3,000,000 ./examples/bigwig.png
+pgt --tracks ./examples/bigwig_track.ini --region X:2,500,000-3,000,000 -o ./examples/bigwig.png
 pgt --tracks ./examples/bigwig_with_genes.ini --region X:2,800,000-3,100,000 -o ./examples/bigwig_with_genes.png
 pgt --tracks ./examples/bigwig_with_genes_and_vlines.ini --region X:2,800,000-3,100,000 -o ./examples/bigwig_with_genes_and_vlines.png
 pgt --tracks ./examples/hic_track.ini -o hic_track.png --region chrX:2500000-3500000 -o ./examples/hic_track.png
 pgt --tracks ./examples/epilogos_track.ini --region X:3100000-3150000 -o ./examples/epilogos_track.png
 pgt --tracks ./examples/epilogos_track2.ini --region X:3100000-3150000 -o ./examples/epilogos_track2.png
-pgt --tracks ./examples/bedgraph_matrix.ini --region X:2000000-3500000 -o ./examples/bedgraph_matrix_lines.png
+pgt --tracks ./examples/bedgraph_matrix_lines.ini --region X:2000000-3500000 -o ./examples/bedgraph_matrix_lines.png
 
 # The following examples require a modification of pygenometracks (adding a new track class)
 # pgt --tracks ./examples/new_track.ini --region X:3000000-3200000 -o ./examples/new_track.png

pygenometracks/tests/generateAllOutput.sh

@@ -1,5 +1,5 @@
 pgt --tracks ./pygenometracks/tests/test_data/bed_and_gtf_tracks.ini --region X:3000000-3300000 --trackLabelFraction 0.2 --width 38 --dpi 130 -o ./pygenometracks/tests/test_data/master_bed_and_gtf.png
-pgt --tracks ./pygenometracks/tests/test_data/bedgraph.ini --region X:2850000-3150000 --trackLabelFraction 0.2 --dpi 130 ./pygenometracks/tests/test_data/master_bedgraph.png
+pgt --tracks ./pygenometracks/tests/test_data/bedgraph.ini --region X:2850000-3150000 --trackLabelFraction 0.2 --dpi 130 -o ./pygenometracks/tests/test_data/master_bedgraph.png
 pgt --tracks ./pygenometracks/tests/test_data/bigwig.ini --region X:2700000-3100000 --trackLabelFraction 0.2 --dpi 130 -o ./pygenometracks/tests/test_data/master_bigwig.png
 pgt --tracks ./pygenometracks/tests/test_data/alpha.ini --region X:2700000-3100000 --trackLabelFraction 0.2 --dpi 130 -o ./pygenometracks/tests/test_data/master_alpha.png
 pgt --tracks ./pygenometracks/tests/test_data/epilogos.ini --region X:3100000-3150000 --trackLabelFraction 0.2 --dpi 130 -o ./pygenometracks/tests/test_data/master_epilogos.png