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‎README.md

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# LocalHGT: an ultrafast horizontal gene transfer detection method from large microbial communities
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## Install
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## Quick start
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There are three methods to install LocalHGT:
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### 1. conda install
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### 3. source code install with self-build environment
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Third, obtain the source code from github, install the dependencies (listed at [Dependencies](#dependencies)), and then install.
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Ensure your platform has `c++ compiler` (g++/clang++) and `make`.
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Ensure your platform has `c++ compiler` (g++) and `make`.
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If you have the root access, just install by:
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```
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Note:
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- If you meet any issues, take a look at [Bug fix](#bug-fix).
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- LocalHGT only accepts paired-end shotgun metagenomic sequencing data.
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- LocalHGT supports Linux, MacOS, and Windows WSL platforms.
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- LocalHGT supports Linux and Windows WSL platforms.
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## Basic Usage

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