From 4c0fcf47f59448ba1db5e457a90cbd87d3d47c1b Mon Sep 17 00:00:00 2001 From: David Barnett Date: Fri, 28 Jul 2023 22:53:21 +0200 Subject: [PATCH] bump to version 0.11.0 --- DESCRIPTION | 2 +- NEWS.md | 2 +- README.md | 18 +++++++++--------- 3 files changed, 11 insertions(+), 11 deletions(-) diff --git a/DESCRIPTION b/DESCRIPTION index 62655559..67f213d1 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,6 +1,6 @@ Package: microViz Title: Microbiome Data Analysis and Visualization -Version: 0.10.11.9000 +Version: 0.11.0 Authors@R: person(given = "David", family = "Barnett", diff --git a/NEWS.md b/NEWS.md index b5b1d628..56af64cc 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,4 +1,4 @@ -# microViz (development version) +# microViz 0.11.0 - `taxatree_models` now accepts transformation arguments to allow transformation after aggregation at each rank diff --git a/README.md b/README.md index a6a82ff8..de0e7ff3 100644 --- a/README.md +++ b/README.md @@ -17,7 +17,7 @@ date)](https://img.shields.io/docker/v/barnettdavid/microviz-rocker-verse?color= status](https://david-barnett.r-universe.dev/badges/microViz)](https://david-barnett.r-universe.dev/ui#package:microViz) [![JOSS article](https://joss.theoj.org/papers/4547b492f224a26d96938ada81fee3fa/status.svg)](https://joss.theoj.org/papers/4547b492f224a26d96938ada81fee3fa) -[![Citations](https://img.shields.io/badge/Citations-~50-blueviolet)](https://scholar.google.com/scholar?oi=bibs&hl=en&cites=5439940108464463894) +[![Citations](https://img.shields.io/badge/Citations-~53-blueviolet)](https://scholar.google.com/scholar?oi=bibs&hl=en&cites=5439940108464463894) [![Zenodo DOI](https://zenodo.org/badge/307119750.svg)](https://zenodo.org/badge/latestdoi/307119750) @@ -159,7 +159,7 @@ formally test this. ``` r library(microViz) -#> microViz version 0.10.10 - Copyright (C) 2023 David Barnett +#> microViz version 0.11.0 - Copyright (C) 2023 David Barnett #> ! Website: https://david-barnett.github.io/microViz #> ✔ Useful? For citation details, run: `citation("microViz")` #> ✖ Silence? `suppressPackageStartupMessages(library(microViz))` @@ -331,8 +331,8 @@ aitchison_perm <- aitchison_dists %>% n_processes = 1, n_perms = 99, # you should use at least 999! variables = "bmi_group" ) -#> 2023-07-20 17:10:01.831556 - Starting PERMANOVA with 99 perms with 1 processes -#> 2023-07-20 17:10:01.889154 - Finished PERMANOVA +#> 2023-07-28 22:52:57.924566 - Starting PERMANOVA with 99 perms with 1 processes +#> 2023-07-28 22:52:57.981476 - Finished PERMANOVA # view the permanova results perm_get(aitchison_perm) %>% as.data.frame() @@ -357,8 +357,8 @@ your permanova directly using the `ord_plot` function with constraints perm2 <- aitchison_dists %>% dist_permanova(variables = c("weight", "african", "sex"), seed = 321) #> Dropping samples with missings: 2 -#> 2023-07-20 17:10:01.900323 - Starting PERMANOVA with 999 perms with 1 processes -#> 2023-07-20 17:10:03.569987 - Finished PERMANOVA +#> 2023-07-28 22:52:57.992459 - Starting PERMANOVA with 999 perms with 1 processes +#> 2023-07-28 22:52:59.653581 - Finished PERMANOVA ``` We’ll visualise the effect of nationality and bodyweight on sample @@ -452,7 +452,7 @@ and by participating in this project you agree to abide by its terms. sessionInfo() #> R version 4.3.0 (2023-04-21) #> Platform: aarch64-apple-darwin20 (64-bit) -#> Running under: macOS Ventura 13.4.1 +#> Running under: macOS Ventura 13.5 #> #> Matrix products: default #> BLAS: /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/lib/libRblas.0.dylib @@ -468,8 +468,8 @@ sessionInfo() #> [1] stats graphics grDevices utils datasets methods base #> #> other attached packages: -#> [1] ggplot2_3.4.2 dplyr_1.1.2 phyloseq_1.44.0 microViz_0.10.10 -#> [5] testthat_3.1.10 devtools_2.4.5 usethis_2.2.2 +#> [1] ggplot2_3.4.2 dplyr_1.1.2 phyloseq_1.44.0 microViz_0.11.0 +#> [5] testthat_3.1.10 devtools_2.4.5 usethis_2.2.2 #> #> loaded via a namespace (and not attached): #> [1] RColorBrewer_1.1-3 shape_1.4.6 rstudioapi_0.15.0