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CHANGELOG.md

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0.3.6 (2024-12-09)

🐛 Bug Fixes

  • BF: Explicitly cast to simple float from numpy.float32 which is now returned by smth (nibabel?). PR #134 (by @yarikoptic)

0.3.5 (2024-03-19)

🐛 Bug Fixes

  • Add codespell config and workflow, and use it to typos found throughout the codebase. PR #131 (by @yarikoptic)

📝 Documentation

🏠 Internal

0.3.4 (Oct 24, 2023) -- Make BIDS great again

  • BIDS metadata extractor(s): do not require participants.tsv file to be present (it is RECOMMENDED not REQUIRED in BIDS)
  • cfg_bids procedure: do not annex any README*, LICENSE, or .bids-validator-config.json files
  • documentation: fix builds on RTD

0.3.3 (Oct 28, 2022) -- Oktoberfest

  • raise dependency on datalad-deprecated which was prematurely released

0.3.2 (Oct 25, 2022) -- ... but grandparents always are

  • increase dependency on datalad to 0.16.7
  • depend on datalad-metalad and datalad-deprecated for both styles of metadata extractors
  • update the metadata extractors to work with current numpy versions
  • BIDS extractor compatible with pybids>=0.15.1 and BIDS v1.6.0
  • fix nifti1 metadata extractor not dealing properly with byte strings
  • various internal changes and fixes around testing and CI setup

0.3.1 (Jun 3, 2020) -- Uncles aren't always nice either

  • be compatible with pydicom 2.0.0

0.3.0 (Feb 26, 2020) -- ... and parents become grumpier

  • DataLad 0.12 series is now minimal supported

0.2.4 (Feb 05, 2020) -- Kids are growing

Minor bugfix release to account for changes in pybids and datalad

  • pybids:
    • demand pybids >=0.9.2
    • account for new field "extension" provided by BIDS now
    • use get_dataset_description if available
  • pandas:
    • use .iloc instead of deprecated .ix
  • datalad
    • use -d^ instead of deprecated (in 0.12) -S in an example script

0.2.3 (May 24, 2019) -- Old is not bad

Minor quick bugfix release to demand pybids < 0.9 since we are not yet fully ready for its full glory

0.2.2 (May 20, 2019) -- It was like that way before!

Minor bugfix release

  • revert back to old ways of installing package data so test data and procedures get properly installed

0.2.1 (May 17, 2019) -- Why wasn't it that way before?

  • include a procedure 'cfg_bids' to configure BIDS datasets
  • fix several issues with troublesome dependency declarations

0.2.0 (Feb 09, 2019) -- Am I compatible with you honey?

  • Make compatible with (and demand) pybids 0.7.{0,1}. 0.7.0 introduced change of terms: modality -> suffix, and type -> datatype, which would now require to either reaggregate all previous metadata or somehow fixup in-place existing metadata files. And for 0.7.1 workaround was added to not return suffix at least when participants.tsv was queried.
  • Make compatible with pydicom 1.0 in treatment of MultiValue
  • Refactorings:
    • tests:
      • use export_archive instead of plain tarfile.open
      • make compatible with recent (0.11.x) DataLad which now extract annex keys etc

0.1.5 (Sep 28, 2018) -- BIDS robustness

  • Assorted improvements of the BIDS metadata extractor performance on datasets in the wild.

0.1.4 (Aug 02, 2018) -- PyBIDS

  • Fixed compatibility with pybids 0.6.4 and now demand it as the minimal PyBIDS version

0.1 (Apr 28, 2018) -- The Release

Major refactoring and deprecations

  • This is the first separate release of DataLad's neuroimaging functionality as an extension module.
  • Metadata
    • BIDS metadata now uniformly refers to subjects and participants using the metadata key 'subject'

Enhancements and new features

  • Extractors now report progress (with DataLad 0.10+)
  • BIDS participant metadata is now read via pybids

Fixes

  • Fix issue with unicode characters in BIDS metadata
  • DICOM metadata now also contains the 'PatientName' field that was previously excluded due to a too restrictive data type filter